Browse Element(s) Details


OsAffx.23771.1.S1_at

Description gb:NM_191550.1
DB_XREF= gi:34910183
GEN=OSJNBb0036G09.10
TID=OsAffx.23771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0036G09.10 (OSJNBb0036G09.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g532301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23771.1.S1_at--841--4691Chr01:30912783..30912813 (25 bp)
GCGGCAGCTGGCGAAGACGAGCGGG
NONE
OsAffx.23771.1.S1_at--173--4691Chr01:30912714..30912738 (25 bp)
GCGGCCGTCGGCTAGACCCAGCGAG
NONE
OsAffx.23771.1.S1_at--861--1651Chr01:30912645..30912669 (25 bp)
AGCCCGGTGGGCTTGTCCGAGAGGT
NONE
OsAffx.23771.1.S1_at--677--10811Chr01:30912633..30912657 (25 bp)
TTGTCCGAGAGGTCGAGCTCGACAC
NONE
OsAffx.23771.1.S1_at--350--1591Chr01:30912618..30912642 (25 bp)
AGCTCGACACCCATGGCGTGCGCAA
NONE
OsAffx.23771.1.S1_at--438--871Chr01:30912606..30912630 (25 bp)
ATGGCGTGCGCAAGCTCCCCGTTGC
NONE
OsAffx.23771.1.S1_at--1042--5933Chr12:19879215..19879239 (25 bp)
GAGCACCTCATCACGGCGGCATCAT
NONE
OsAffx.23771.1.S1_at--1116--8271Chr01:30912551..30912575 (25 bp)
GGCATCATCCGAGACTTTGCAGACT
NONE
OsAffx.23771.1.S1_at--45--551Chr01:30912545..30912569 (25 bp)
ATCCGAGACTTTGCAGACTCGCCGG
NONE
OsAffx.23771.1.S1_at--513--5991Chr01:30912541..30912565 (25 bp)
GAGACTTTGCAGACTCGCCGGCCTC
NONE
OsAffx.23771.1.S1_at--638--2691Chr01:30911969..30912124 (25 bp)
AAGCTGCGTGTCTGCCGGCCGGCTC
LOC_Os01g53230
Target Sequence 
GCGGCAGCTGGCGAAGACGAGCGGGGAGAGAAGCAGCGGCCGACGGAGAGGAGCTTGGCGTTGGTGGTGGCGGCCGTCGG
CTAGACCCAGCGAGCGCCGTCCTCTGCCAGGAACGCGTAGCGGCGAGACCGGACGTCGAGCCCGGTGGGCTTGTCCGAGA
GGTCGAGCTCGACACCCATGGCGTGCGCAAGCTCCCCGTTGCCGTCGGAAAGGAGGAGCACCTCATCACGGCGGCATCAT
CCGAGACTTTGCAGACTCGCCGGCCTCCTCACTTCACCCCGTCGGCCTCCTCCCCACCTGCCGGTTGCGGTGGCGGTGGC
GGTGGCGATGGTGCTTGTTCGGGCGGTGAGCCTCCACACCGTGGCCATGGCGGCGAGCGCCTGCGGCTCCGACTGCTCGC
CGGCGCCGAGGTCGACGCCGACGCCCAGTACCGGGTCATCGTCGAGCCCACGCGACGCGCTGAAGCTGCGTGTCTGCCGG
CCGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis