Browse Element(s) Details


OsAffx.23770.1.S1_at

Description tigr:9629.m05174
TID=OsAffx.23770.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5320011/11flavin-containing monooxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23770.1.S1_at--20--6951Chr01:30890098..30890119 (22 bp)
GTAGTACACATCTTGCCCAGGGAGA
LOC_Os01g53200
OsAffx.23770.1.S1_at--278--9651Chr01:30890127..30890151 (25 bp)
TCAGTCCACCTTTGGGCTGTCAATG
LOC_Os01g53200
OsAffx.23770.1.S1_at--1067--2971Chr01:30890148..30890172 (25 bp)
AATGTGGCTGCTCAAGTGGCTCCCA
LOC_Os01g53200
OsAffx.23770.1.S1_at--707--8531Chr01:30890183..30890207 (25 bp)
TGGACCGAATTCTACTGCTCATAGC
LOC_Os01g53200
OsAffx.23770.1.S1_at--657--9091Chr01:30890198..30890222 (25 bp)
TGCTCATAGCTCAGACCATGCTTGG
LOC_Os01g53200
OsAffx.23770.1.S1_at--342--1551Chr01:30890234..30890258 (25 bp)
AGCTTGGGCTAAAGCGTCCTACCAT
LOC_Os01g53200
OsAffx.23770.1.S1_at--831--1211Chr01:30890298..30890322 (25 bp)
AGTTCTTGACGTCGGCACATTTGCA
LOC_Os01g53200
OsAffx.23770.1.S1_at--159--7371Chr01:30890336..30890492 (25 bp)
GTGACATCAAGGTACGGCCGGCCAT
LOC_Os01g53200
OsAffx.23770.1.S1_at--783--751Chr01:30890549..30890573 (25 bp)
ATGTCATTGTGCTTGCCACCGGCTA
LOC_Os01g53200
OsAffx.23770.1.S1_at--367--5951Chr01:30890577..30890601 (25 bp)
GAGCAACGTTCCCTTCTGGTTAAAG
LOC_Os01g53200
OsAffx.23770.1.S1_at--72--7991Chr01:30890899..30890923 (25 bp)
GGATGCTCGGAGAATTGCTCACGAC
LOC_Os01g53200
Target Sequence 
GTAGTACACATCTTGCCCAGGGAGATGCTGGGTCAGTCCACCTTTGGGCTGTCAATGTGGCTGCTCAAGTGGCTCCCAGT
CCACGTGGTGGACCGAATTCTACTGCTCATAGCTCAGACCATGCTTGGGGATACTGCTCAGCTTGGGCTAAAGCGTCCTA
CCATCGGTCCTCTCGAGCTCAAGTCACTCTCAGGGAAGACCCCAGTTCTTGACGTCGGCACATTTGCAAAGATTAAGTCT
GGTGACATCAAGGTACGGCCGGCCATAAAACAAATATCAGGGAGACAGGTAGAGTTCATGGACACAAGGTTGGAGGAGTT
TGATGTCATTGTGCTTGCCACCGGCTACAAGAGCAACGTTCCCTTCTGGTTAAAGGANNNNNNNNNNNNNNNNNNNNNNN
NTGGGTTGCCAAGGAAGGCATTTCCAAACGGTTGGAAGGGTGAGAACGGGCTCTACTCGGTCGGGTTCACCCGGCGCGGG
CTGATGGGAACATCGGTGGATGCTCGGAGAATTGCTCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis