Browse Element(s) Details


Os.52504.1.S1_at

Description gb:AK067563.1
DB_XREF= gi:32977581
TID=Os.52504.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111I12, full insert sequence.
FL= gb:AK067563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5315011/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52504.1.S1_at--773--9851Chr01:30868083..30868390 (25 bp)
TACCCTAGGTTCAAGACCTTTCAAG
LOC_Os01g53150
Os.52504.1.S1_at--352--3211Chr01:30868387..30868411 (25 bp)
CAAGGAACGGTTTCTGTGATGGGCA
LOC_Os01g53150
Os.52504.1.S1_at--164--5271Chr01:30868412..30868436 (25 bp)
GAATGCATGGAACAGGCCACATTAT
LOC_Os01g53150
Os.52504.1.S1_at--308--8591Chr01:30868454..30868478 (25 bp)
TGGTTTCTTTTATCACATGCTTAAT
LOC_Os01g53150
Os.52504.1.S1_at--193--3531Chr01:30868469..30868493 (25 bp)
CATGCTTAATCAAGTGCGTGCTGGC
LOC_Os01g53150
Os.52504.1.S1_at--616--9131Chr01:30868487..30868511 (25 bp)
TGCTGGCACAAGTCCGCCTGGAGAA
LOC_Os01g53150
Os.52504.1.S1_at--655--8791Chr01:30868567..30868591 (25 bp)
TGTTCTTATTAGTAGGATCCCATGC
LOC_Os01g53150
Os.52504.1.S1_at--126--6391Chr01:30868582..30868606 (25 bp)
GATCCCATGCTGATGTGTGTTTCGT
LOC_Os01g53150
Os.52504.1.S1_at--650--7471Chr01:30868596..30868620 (25 bp)
GTGTGTTTCGTTTGTTAGGCCTCTC
LOC_Os01g53150
Os.52504.1.S1_at--1093--10071Chr01:30868611..30868635 (25 bp)
TAGGCCTCTCTCCTTTCTTAGGTTT
LOC_Os01g53150
Os.52504.1.S1_at--54--7271Chr01:30868649..30868673 (25 bp)
GTCCTCAGTTCTGTCTTACTGCTAA
LOC_Os01g53150
Target Sequence 
TACCCTAGGTTCAAGACCTTTCAAGGAACGGTTTCTGTGATGGGCAGAATGCATGGAACAGGCCACATTATTGGGATCCA
TCATACAATGGTTTCTTTTATCACATGCTTAATCAAGTGCGTGCTGGCACAAGTCCGCCTGGAGAATGGAGATAGAAAAA
TGCTCAGGTAATTGCAGGCTAGTTTGATAGTACTAGTAAACTGTTCTTATTAGTAGGATCCCATGCTGATGTGTGTTTCG
TTTGTTAGGCCTCTCTCCTTTCTTAGGTTTGCCCTTCCCATCTGTCCTCAGTTCTGTCTTACTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis