Browse Element(s) Details


OsAffx.25766.2.S1_at

Description tigr:9629.m05162
TID=OsAffx.25766.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5310010/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25766.2.S1_at--764--1771NONE
ACCGACGCCTATCACCGACGAGGAG
NONE
OsAffx.25766.2.S1_at--1121--5951Chr01:30844085..30844109 (25 bp)
GAGAAGGCAAGATCCTGTCACGGCT
LOC_Os01g53100
OsAffx.25766.2.S1_at--571--5291Chr01:30844087..30844111 (25 bp)
GAAGGCAAGATCCTGTCACGGCTGC
LOC_Os01g53100
OsAffx.25766.2.S1_at--659--2931Chr01:30844088..30844112 (25 bp)
AAGGCAAGATCCTGTCACGGCTGCG
LOC_Os01g53100
OsAffx.25766.2.S1_at--807--931Chr01:30844089..30844113 (25 bp)
AGGCAAGATCCTGTCACGGCTGCGG
LOC_Os01g53100
OsAffx.25766.2.S1_at--63--3231Chr01:30844092..30844116 (25 bp)
CAAGATCCTGTCACGGCTGCGGGTT
LOC_Os01g53100
OsAffx.25766.2.S1_at--232--9271Chr01:30844097..30844121 (25 bp)
TCCTGTCACGGCTGCGGGTTGACGC
LOC_Os01g53100
OsAffx.25766.2.S1_at--40--9691Chr01:30844102..30844126 (25 bp)
TCACGGCTGCGGGTTGACGCGTGGA
LOC_Os01g53100
OsAffx.25766.2.S1_at--20--4491Chr01:30844152..30844176 (25 bp)
GCCGGCAGTGGCGAGATGGCCGACG
LOC_Os01g53100
OsAffx.25766.2.S1_at--560--871Chr01:30844167..30844191 (25 bp)
ATGGCCGACGGGGACTCATGACGCC
LOC_Os01g53100
OsAffx.25766.2.S1_at--619--1315Chr10:10678847..10678965 (25 bp)
AGAGGGAGGAGACGTGTGGGTCCCA
NONE
Target Sequence 
ACCGACGCCTATCACCGACGAGGAGAAGGCAAGATCCTGTCACGGCTGCGGGTTGACGCGTGGACGAGCCAGCACGACGC
CGGGAGGGCGCCGGCAGTGGCGAGATGGCCGACGGGGACTCATGACGCCGGCGTGGGGGAGAGAAAGAGAGAAGGAAGAG
AGAGGGAGGAGACGTGTGGGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25766.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis