Browse Element(s) Details


Os.26700.1.S1_x_at

Description gb:AK120751.1
DB_XREF= gi:37990374
TID=Os.26700.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435H01.25 (P0435H01.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004P12, full insert sequence.
FL= gb:AK120751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5307011/11DNA polymerase III, delta subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26700.1.S1_x_at--990--1932Chr07:19211498..19211517 (20 bp)
ACGGCATCGTTGATGTCCTCGACAA
NONE
Os.26700.1.S1_x_at--804--4431Chr01:30822161..30822185 (25 bp)
GCCTTCGCACTACAGGGTGTTTATA
LOC_Os01g53070
Os.26700.1.S1_x_at--724--231Chr01:30822139..30822163 (25 bp)
ATATTTGATGACTGCGATACGCTGC
LOC_Os01g53070
Os.26700.1.S1_x_at--156--9211Chr01:30822117..30822141 (25 bp)
TGCCAGCCGACACTTGGAGCTTAAT
LOC_Os01g53070
Os.26700.1.S1_x_at--1005--5831Chr01:30822031..30822055 (25 bp)
GACCTTCCTCATATAATCCTATCGA
LOC_Os01g53070
Os.26700.1.S1_x_at--700--3411Chr01:30822001..30822025 (25 bp)
CAGAAGTTCTTCTTTCCCAAGTTGA
LOC_Os01g53070
Os.26700.1.S1_x_at--619--5331Chr01:30821903..30821927 (25 bp)
GAAGTTAATTGCATCCCGTTCAGAT
LOC_Os01g53070
Os.26700.1.S1_x_at--1003--1471Chr01:30821824..30821848 (25 bp)
AGAATTTCCTTATCTCTTGTCCAAG
LOC_Os01g53070
Os.26700.1.S1_x_at--371--9751Chr01:30821775..30821799 (25 bp)
TAATATTACTCCCTTTCTGCTTTTT
LOC_Os01g53070
Os.26700.1.S1_x_at--1039--2051Chr01:30821727..30821751 (25 bp)
ACTTCTGTATCTGCTGTCAATATCG
LOC_Os01g53070
Os.26700.1.S1_x_at--1043--7071Chr01:30821712..30821736 (25 bp)
GTCAATATCGTATTACCCCATCTGG
LOC_Os01g53070
Target Sequence 
ACGGCATCGTTGATGTCCTCGACAACGTCATGCTTTCGCCGGCGCCTTCGCACTACAGGGTGTTTATATTTGATGACTGC
GATACGCTGCCAGCCGACACTTGGAGCTTAATCTCGAAAGTGGTGGACCGGGCGCCCCGCCGCGTGGTGTTCATCCTCGT
CAGTCCCAACCTCGACCTTCCTCATATAATCCTATCGAGATGTCAGAAGTTCTTCTTTCCCAAGTTGAAGGAGTGCGACA
TTGTTAACACTTTGCAATGGATTTCGACCAGCGAAAGTTTAGATGTTGATAGGGATGCACTGAAGTTAATTGCATCCCGT
TCAGATGGATCATTGAGGGATGCTGAGATGACTCTTGATCAGCTGAGTTTGCTGGGGCAGAGAATTTCCTTATCTCTTGT
CCAAGAACTTGTAAGATATCTCTCAAGCTTAATATTACTCCCTTTCTGCTTTTTTTTTTTTGGAAAACCAAATTATACTT
CTGTATCTGCTGTCAATATCGTATTACCCCATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26700.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis