Browse Element(s) Details


Os.32899.1.S1_x_at

Description gb:NM_191882.1
DB_XREF= gi:34910847
GEN=P0435H01.20
TID=Os.32899.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435H01.20 (P0435H01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0435H01.20 (P0435H01.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g530106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52950NANA1+30768481..30770907retrotransposon protein, putative, unclassified
LOC_Os01g52960OsAffx.21520.1.S1_at11/111+30773205..30773854Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32899.1.S1_x_at--618--2131Chr01:30794909..30794933 (25 bp)
ACAGGGATCAACGTGCGGTGCAGCT
LOC_Os01g53010
Os.32899.1.S1_x_at--924--3971Chr01:30794894..30794918 (25 bp)
CGGTGCAGCTCCTTGCGCTGTGCTG
LOC_Os01g53010
Os.32899.1.S1_x_at--744--9111Chr01:30794864..30794888 (25 bp)
TGCTGCTGTGCTGCGGCTCATTGTG
LOC_Os01g53010
Os.32899.1.S1_x_at--448--4811Chr01:30794849..30794873 (25 bp)
GCTCATTGTGCCAGGGCCGCATGTC
LOC_Os01g53010
Os.32899.1.S1_x_at--879--5351Chr01:30794736..30794760 (25 bp)
GAAGATGCGCGCACGACGATGCCAA
LOC_Os01g53010
Os.32899.1.S1_x_at--221--4611Chr01:30794686..30794710 (25 bp)
GCGACTGATGCGGTCCGTTCCGAGC
LOC_Os01g53010
Os.32899.1.S1_x_at--528--5231Chr01:30793280..30793304 (25 bp)
GAATCAATCCCGGTTTGCGGTGGCC
NONE
Os.32899.1.S1_x_at--386--5293Chr01:29885476..29885495 (20 bp)
GAATGGAGCGGATTTCTCTCAAGCC
NONE
Os.32899.1.S1_x_at--924--9711Chr01:30793180..30793204 (25 bp)
TCAAGCCGCCGTTTCTTTCGAACGA
NONE
Os.32899.1.S1_x_at--1001--5612Chr05:21775599..21775620 (22 bp)
GACAAACCGACTGGATTTCTCTAGG
NONE
Os.32899.1.S1_x_at--1013--9511Chr01:30793140..30793164 (25 bp)
TCTCTAGGTCGGGATCTGACCAAGA
NONE
Target Sequence 
ACAGGGATCAACGTGCGGTGCAGCTCCTTGCGCTGTGCTGCGGCCTGCTGCTGTGCTGCGGCTCATTGTGCCAGGGCCGC
ATGTCGCCGGGGATGGNGATGGGGAGGAGGCANNGATGGTGTGCTTGGAAGCGAGCGTTGGCGTGGTGGTCAGGGCGTAC
CAGGCCAGCGACGGGGAAGATGCGCGCACGACGATGCCAATGCCGCCTCCGGCGGCGAGGACGGAGCGACTGATGCGGTC
CGTTCCGAGCCCTGGTGTTGGGCACTAGCTAGGNNNNTNNNNNNNCNTNNTNNNNTNNNNNNNNNNGNNNNNNNNNNANN
ANANNNNNNNAGTAAATTGAATCAATCCCGGTTTGCGGTGGCCCGGGGCGCGGCGTGCTCACGGTGGCTGGCGGCGGTAG
CCCATGTGATGAAGGAAGGGGAATGGAGCGGATTTCTCTCAAGCCGCCGTTTCTTTCGAACGACAAACCGACTGGATTTC
TCTAGGTCGGGATCTGACCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32899.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis