Browse Element(s) Details


Os.34596.2.S1_x_at

Description gb:NM_191879.1
DB_XREF= gi:34910841
GEN=P0456A01.29
TID=Os.34596.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456A01.29 (P0456A01.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0456A01.29 (P0456A01.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5298011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified
LOC_Os01g52950NANA1+30768481..30770907retrotransposon protein, putative, unclassified
LOC_Os01g52960OsAffx.21520.1.S1_at11/111+30773205..30773854Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34596.2.S1_x_at--1055--4911Chr01:30781411..30781435 (25 bp)
GCTTCCTGCAGGCTATGATGTCCAA
LOC_Os01g52980
Os.34596.2.S1_x_at--452--2551Chr01:30781388..30781412 (25 bp)
AACTGCCCATCGCTAGAGTGCACAA
LOC_Os01g52980
Os.34596.2.S1_x_at--460--10131Chr01:30781333..30781357 (25 bp)
TATGCGTCCGATCGAGGAACCTGGT
LOC_Os01g52980
Os.34596.2.S1_x_at--725--4551Chr01:30781308..30781332 (25 bp)
GCGCCTGTTCGGTGATTTCAGTTAC
LOC_Os01g52980
Os.34596.2.S1_x_at--950--2891Chr01:30781208..30781232 (25 bp)
AAGGTCAAGATCGTCTTCGCGCCGA
LOC_Os01g52980
Os.34596.2.S1_x_at--398--10291Chr01:30780737..30780761 (25 bp)
TTTGCCGGCCGGTCGATGTTGAAGA
LOC_Os01g52980
Os.34596.2.S1_x_at--423--2511Chr01:30780700..30780724 (25 bp)
AACATCTGTCCAGTGCATTGAACAT
LOC_Os01g52980
Os.34596.2.S1_x_at--846--5691Chr01:30780636..30780660 (25 bp)
GACTGCCAATGGAGGTTTCTGACGT
LOC_Os01g52980
Os.34596.2.S1_x_at--404--5771Chr01:30780616..30780640 (25 bp)
GACGTTTCTGCTTGGGATGGCTAGA
LOC_Os01g52980
Os.34596.2.S1_x_at--264--7951Chr01:30780583..30780607 (25 bp)
GGATATTGACTTCCACTGTTCAGAA
LOC_Os01g52980
Os.34596.2.S1_x_at--287--1251Chr01:30780367..30780577 (25 bp)
AGATTGGGCAAGTCTGAAACTGTGT
LOC_Os01g52980
Target Sequence 
GCTTCCTGCAGGCTATGATGTCCAACTGCCCATCGCTAGAGTGCACAAAGCTGAAGAACATCACCGGACTAGACAAGATA
TGCGTCCGATCGAGGAACCTGGTGCGCCTGTTCGGTGATTTCAGTTACCTGAAGGAGCTCGTCGTCGAGGACGCCCCCAA
CCTCGAAGAATTGGTGGGGATCGGCCTCCCGCTCGCTGCAGCGAAGGTCAAGATCGTCTTCGCGCCGAAGCTGCGGCCAG
ACAGCCGGTCAATTTGCCGGCCGGTCGATGTTGAAGAGTGGGACACAATAACATCTGTCCAGTGCATTGAACATTCCATG
AACAAATTGGTCTTCGAGGATTTTGGAGGGGAAGACTGCCAATGGAGGTTTCTGACGTTTCTGCTTGGGATGGCTAGAGC
TCTCAAGGATATTGACTTCCACTGTTCAGAAAGCAAAGATTGGGCAAGTCTGAAACTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34596.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis