Browse Element(s) Details


Os.5941.1.S1_at

Description gb:AK109770.1
DB_XREF= gi:32994979
TID=Os.5941.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435H01.23 (P0435H01.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A06, full insert sequence.
FL= gb:AK109770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5304011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5941.1.S1_at--70--8451Chr01:30807493..30807517 (25 bp)
GGCCATGACATGATGCTGACACAGA
LOC_Os01g53040
Os.5941.1.S1_at--81--5851Chr01:30807440..30807464 (25 bp)
GACCAGACAAGCTCCTGTAGTTTTT
LOC_Os01g53040
Os.5941.1.S1_at--972--6751Chr01:30807407..30807431 (25 bp)
GTTCACTTGCCAATTGTCGGTTAGT
LOC_Os01g53040
Os.5941.1.S1_at--7--10311Chr01:30807379..30807403 (25 bp)
TTTCCCTCCTCATTTTGGTTATTCT
LOC_Os01g53040
Os.5941.1.S1_at--891--10771Chr01:30807244..30807268 (25 bp)
TTGTTTTCTCCTTTGGAACCATCAA
LOC_Os01g53040
Os.5941.1.S1_at--411--31Chr01:30807178..30807202 (25 bp)
ATTGGAACTCCATTTTTTGCTCTGA
LOC_Os01g53040
Os.5941.1.S1_at--1126--10271Chr01:30807163..30807187 (25 bp)
TTTGCTCTGAAAACTCTGCCTATGT
LOC_Os01g53040
Os.5941.1.S1_at--802--9491Chr01:30807149..30807173 (25 bp)
TCTGCCTATGTCCTTGTCATGTTGC
LOC_Os01g53040
Os.5941.1.S1_at--497--9791Chr01:30807075..30807099 (25 bp)
TAACGATTTCGTGTCAGACCCAAAT
LOC_Os01g53040
Os.5941.1.S1_at--679--5811Chr01:30807059..30807083 (25 bp)
GACCCAAATTCTGAGCATTGTCTGC
LOC_Os01g53040
Os.5941.1.S1_at--123--1471Chr01:30807031..30807055 (25 bp)
AGAAGGGCTGTCTTTGTTCACGATC
LOC_Os01g53040
Target Sequence 
GGCCATGACATGATGCTGACACAGACAGGTGGGCCCGGTCCGGCCTCCAATAAGACCAGACAAGCTCCTGTAGTTTTTGG
CTTCTTGTTCACTTGCCAATTGTCGGTTAGTTTTTTTCCCTCCTCATTTTGGTTATTCTCTACAGTAGCATACAGAAAAG
AATCGGTACAATATTATTATTGCACACTGTTGATTGGAGAAAGGATTGAGAGAGACAAGTCACTTTGTCAATGGTTTGGT
TGAAGATTTTTGTTTTCTCCTTTGGAACCATCAATGGATACATAAATAAAGATTGGAAAAAAGAAACACAGAAGGATTGG
AACTCCATTTTTTGCTCTGAAAACTCTGCCTATGTCCTTGTCATGTTGCGCAAATGGATAACATTGAATTGTTCATTACT
ACAGAAAAAAGTTCCACTTAACGATTTCGTGTCAGACCCAAATTCTGAGCATTGTCTGCAATAGAAGGGCTGTCTTTGTT
CACGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis