Browse Element(s) Details


OsAffx.11579.1.S1_at

Description gb:NM_191884.1
DB_XREF= gi:34910851
GEN=P0435H01.22
TID=OsAffx.11579.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0435H01.22 (P0435H01.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g530307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11579.1.S1_at--544--1211Chr01:30802819..30802843 (25 bp)
AGTTCAAACCAACGCGGCCGAAGCG
NONE
OsAffx.11579.1.S1_at--451--5391Chr01:30802800..30802824 (25 bp)
GAAGCGCCGAACTCCCAGCACAAAT
NONE
OsAffx.11579.1.S1_at--634--9331Chr01:30802716..30802740 (25 bp)
TCGCCGAATCCCAGAGAATTTCAGC
NONE
OsAffx.11579.1.S1_at--991--5951Chr01:30802703..30802727 (25 bp)
GAGAATTTCAGCCAAGAATCCCCAA
NONE
OsAffx.11579.1.S1_at--248--8891Chr01:30802652..30802676 (25 bp)
TGAGGAGTTCTTCGCCAGCATTGAC
LOC_Os01g53030
OsAffx.11579.1.S1_at--396--1551Chr01:30802636..30802660 (25 bp)
AGCATTGACTCCCTCTGGTTCTTCT
LOC_Os01g53030
OsAffx.11579.1.S1_at--562--9311Chr01:30802596..30802620 (25 bp)
TCCCGCCGCCTGTCAAGGAGAAGAC
LOC_Os01g53030
OsAffx.11579.1.S1_at--279--5971Chr01:30802579..30802603 (25 bp)
GAGAAGACGAAGTGCCCTCCTCCTG
LOC_Os01g53030
OsAffx.11579.1.S1_at--839--1631Chr01:30802530..30802554 (25 bp)
AGCGGGATTCTCCTGAGATCCACGA
LOC_Os01g53030
OsAffx.11579.1.S1_at--485--4631Chr01:30802497..30802521 (25 bp)
GCGATTGCGGCCATGAAGATCCCGG
LOC_Os01g53030
OsAffx.11579.1.S1_at--741--4331Chr01:30802275..30802299 (25 bp)
CCATGAGGGCGCATCTCAGGTCGTG
LOC_Os01g53030
Target Sequence 
AGTTCAAACCAACGCGGCCGAAGCGCCGAACTCCCAGCACAAATCCCTCCTCGGTCTCCAACCGTTTCTCCCCTCCTCCT
CCTCCTCCTCCCCCCCCCCCCCCTCGCCGAATCCCAGAGAATTTCAGCCAAGAATCCCCAACATATGGAAGGGCAGGAGG
AGGAGGATGAGGAGTTCTTCGCCAGCATTGACTCCCTCTGGTTCTTCTCCAGCGTCTTCCTCCTCCCGCCGCCTGTCAAG
GAGAAGACGAAGTGCCCTCCTCCTGGGCCCGGAGAGTTGCAGCCCGAGGAGCGGGATTCTCCTGAGATCCACGAGAAGGA
CGGCGATTGCGGCCATGAAGATCCCGGAGGCGTTAGGAAGGCGGTGGCGCCGGTGGCAGGCGGGAGGAGAGCGGCTGCGG
CTGCAAGAGGCCGGGTGGTCGAGGAGGAGCGCATGGACATGTGGCAGGAGCAGTGCCGGCAGATGCGCGTCGCCGCCGCC
GCCGCCGCCGCCGCGCCGGCGCGGTGCTCGCCTTTGCCGATGCCGCGCACGAGCGACGGCCCGGCCATGAGGGCGCATCT
CAGGTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis