Browse Element(s) Details


Os.953.1.S2_at

Description gb:AK105417.1
DB_XREF= gi:32990626
TID=Os.953.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative trehalose-6-phosphate synthase (P0456A01.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A05, full insert sequence.
FL= gb:AK105417.1 gb:AK101207.1 gb:AK109542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5300011/11Trehalose synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified
LOC_Os01g52950NANA1+30768481..30770907retrotransposon protein, putative, unclassified
LOC_Os01g52960OsAffx.21520.1.S1_at11/111+30773205..30773854Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.953.1.S2_at--672--6371Chr01:30790732..30790756 (25 bp)
GATCCCCAAACATCATTATATGCGT
LOC_Os01g53000
Os.953.1.S2_at--800--10191Chr01:30790748..30790772 (25 bp)
TATATGCGTGCACAGTCGGCCAGAA
LOC_Os01g53000
Os.953.1.S2_at--259--5491Chr01:30790818..30790842 (25 bp)
GAACATGCTTGAGGCGCTTGCAGAT
LOC_Os01g53000
Os.953.1.S2_at--873--511Chr01:30790891..30790915 (25 bp)
ATCCCGGACCCGGAATAGGCGTGAT
LOC_Os01g53000
Os.953.1.S2_at--405--471Chr01:30790926..30790950 (25 bp)
ATCTCCTGGTGATGTCAATGCGTCA
LOC_Os01g53000
Os.953.1.S2_at--276--9151Chr01:30790944..30790968 (25 bp)
TGCGTCAATTGCCACCAGCAGTCTT
LOC_Os01g53000
Os.953.1.S2_at--716--3371Chr01:30790956..30790980 (25 bp)
CACCAGCAGTCTTCCTGACTAAAAT
LOC_Os01g53000
Os.953.1.S2_at--948--8731Chr01:30791041..30791065 (25 bp)
TGTCAATAATCTTAGCGCTGCTCGA
LOC_Os01g53000
Os.953.1.S2_at--125--4811Chr01:30791060..30791084 (25 bp)
GCTCGATTTTCTGCCATTTTTCTGA
LOC_Os01g53000
Os.953.1.S2_at--1092--4431Chr01:30791072..30791096 (25 bp)
GCCATTTTTCTGATTTCTCTTATGA
LOC_Os01g53000
Os.953.1.S2_at--787--8351Chr01:30791160..30791184 (25 bp)
GGCGTAGTACATCATTTTTCTTTTA
LOC_Os01g53000
Target Sequence 
GATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGA
TGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAGATGCAGAAGAGATAACATCTA
TCCCGGACCCGGAATAGGCGTGATGATGTTTTAAATCTCCTGGTGATGTCAATGCGTCAATTGCCACCAGCAGTCTTCCT
GACTAAAATTGAAGCTGATTGCCATCAGCAGGAAGTGCAACTTTAGTAATACTCAGTTAGACAAATCAATGTCAATAATC
TTAGCGCTGCTCGATTTTCTGCCATTTTTCTGATTTCTCTTATGATAGTTTTGGAGTAATTCTCATAATATTGGTAGATA
GAAAGGAGCCTGGGGGGAAAGAATCCATGGCGTAGTACATCATTTTTCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.953.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis