Browse Element(s) Details


Os.49277.1.S1_at

Description gb:AK100064.1
DB_XREF= gi:32985273
TID=Os.49277.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160L20, full insert sequence.
FL= gb:AK100064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5302010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49277.1.S1_at--792--10511NONE
TTCAGTTGATGTGTTTCGGATGGCA
NONE
Os.49277.1.S1_at--613--2311Chr01:30801428..30801452 (25 bp)
AAAGGTCAGAAGACGTGTGAGCCAA
LOC_Os01g53020
Os.49277.1.S1_at--58--5351Chr01:30801453..30801477 (25 bp)
GAAGATTCTGGTAAGGGCAGCTCAT
LOC_Os01g53020
Os.49277.1.S1_at--1010--2871Chr01:30801465..30801489 (25 bp)
AAGGGCAGCTCATGGAGTGATGTCT
LOC_Os01g53020
Os.49277.1.S1_at--906--8151Chr01:30801702..30801726 (25 bp)
GGAAAGGTGCAGACAAGCCTCCCAC
LOC_Os01g53020
Os.49277.1.S1_at--966--2511Chr01:30801732..30801756 (25 bp)
AACTTCCAGAGGCAGTGTCCAACAA
LOC_Os01g53020
Os.49277.1.S1_at--1065--2271Chr01:30801798..30801822 (25 bp)
AAAGCAGTGCTACCTAACCCCATTG
LOC_Os01g53020
Os.49277.1.S1_at--983--4831Chr01:30801806..30801830 (25 bp)
GCTACCTAACCCCATTGAAATCATG
LOC_Os01g53020
Os.49277.1.S1_at--7--6891Chr01:30801857..30801881 (25 bp)
GTATAGCATTTATGCTCTCTCGCCC
LOC_Os01g53020
Os.49277.1.S1_at--220--6631Chr01:30801935..30801959 (25 bp)
GTTGGTCACCATATAGAATACAGAA
LOC_Os01g53020
Os.49277.1.S1_at--976--6471Chr01:30801982..30802006 (25 bp)
GATACTGTACCATTGCTACTCATAC
LOC_Os01g53020
Target Sequence 
TTCAGTTGATGTGTTTCGGATGGCAAGTACACGATGGGAGAAAAGACAGGCTAAAGTCTTGGAAAAGGTCAGAAGACGTG
TGAGCCAAGAAGATTCTGGTAAGGGCAGCTCATGGAGTGATGTCTGGGGAGCACCAACAAGATATCGAAAGAACGAGGAC
GAAGCAAGGGAGAGAGCAAAGCGAGCAGCGGCGGCAGCGAGGAGGTGGAGAGAATACTCGAGGAAAGGTGCAGACAAGCC
TCCCACATTCAAACTTCCAGAGGCAGTGTCCAACAAGGAGTGAGAGAACCGAACACAATCAAATGAGAGTTTTTATCAAA
GCAGTGCTACCTAACCCCATTGAAATCATGTATAGTCTAATTATTTGCAGAGAGCTGTATAGCATTTATGCTCTCTCGCC
CTCCATTCCACATGATGACCAATATCTTCCAATATTCTGCTTGAGATAGTTGGTGTTGGTCACCATATAGAATACAGAAC
TACAGATTCCAAGTGTAGAAAGATACTGTACCATTGCTACTCATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis