Browse Element(s) Details


Os.35947.1.S1_at

Description gb:AK064757.1
DB_XREF= gi:32974775
TID=Os.35947.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (P0456A01.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G10, full insert sequence.
FL= gb:AK064757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5297011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified
LOC_Os01g52950NANA1+30768481..30770907retrotransposon protein, putative, unclassified
LOC_Os01g52960OsAffx.21520.1.S1_at11/111+30773205..30773854Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52970Os.35947.1.S1_at11/111+30774275..30776054F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.1.S1_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g52980Os.34596.2.S1_x_at11/111+30780201..30782186F-box domain containing protein, expressed
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35947.1.S1_at--456--372Chr03:30957022..30957047 (24 bp)
ATCAATTGGTTCATGCAGCTCCTCA
NONE
Os.35947.1.S1_at--244--2691Chr01:30774924..30774948 (25 bp)
AAGCTGTTCCCTTGCCTAGAAACGC
LOC_Os01g52970
Os.35947.1.S1_at--647--5551Chr01:30774787..30774930 (25 bp)
GAAACGCTCTACATCAGGTCAGACA
LOC_Os01g52970
Os.35947.1.S1_at--1106--9631Chr01:30774774..30774794 (21 bp)
TCAGGTCAGACACTTGGTCCAAGGT
LOC_Os01g52970
Os.35947.1.S1_at--854--7251Chr01:30774731..30774755 (25 bp)
GTCCTGGGACGTGCTGAGATCTGTC
LOC_Os01g52970
Os.35947.1.S1_at--750--9051Chr01:30774703..30774727 (25 bp)
TGCATCGACAACCACCTTGAGAGGG
LOC_Os01g52970
Os.35947.1.S1_at--322--3231Chr01:30774632..30774656 (25 bp)
CAAGTTTCTCCACGGCAGGGCCAGG
LOC_Os01g52970
Os.35947.1.S1_at--808--3491Chr01:30774596..30774620 (25 bp)
CATGGAGTTCCACTGCCAGGGAGAT
LOC_Os01g52970
Os.35947.1.S1_at--848--1511Chr01:30774531..30774555 (25 bp)
AGCAGCAGGAGCTACTGTGCCTCGA
LOC_Os01g52970
Os.35947.1.S1_at--804--2871Chr01:30774469..30774493 (25 bp)
AAGGGCGCTCTGGTGAATAATCATC
LOC_Os01g52970
Os.35947.1.S1_at--729--3071Chr01:30774451..30774475 (25 bp)
AATCATCACGATGTTAGCCACCATG
LOC_Os01g52970
Target Sequence 
ATCAATTGGTTCATGCAGCTCCTCAAGCTGTTCCCTTGCCTAGAAACGCTCTACATCAGGTCAGACACTTGGTCCAAGGT
CCGCGCCGCGGCACCGGGGTCCTGGGACGTGCTGAGATCTGTCCCCTGCATCGACAACCACCTTGAGAGGGTGGTGTTTG
AGGTTTACCGGGGGCACGAGTGGCAGAGGGAGATGGCCAAGTTTCTCCACGGCAGGGCCAGGTTCCTCAAGGCCATGGAG
TTCCACTGCCAGGGAGATAAAGGTTGCAGCGAGCTTTTGGGTGAAGAATGGGTCAGGGAGCAGCAGGAGCTACTGTGCCT
CGACAGCCGGGCATCCTTGGACGCTCGTTTCCTCTTCTTCAAGGGCGCTCTGGTGAATAATCATCACGATGTTAGCCACC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis