Browse Element(s) Details


Os.37745.1.S1_at

Description gb:AK109409.2
DB_XREF= gi:42821723
TID=Os.37745.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pathogenesis related protein (P0435H01.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D12, full insert sequence.
FL= gb:AK106037.1 gb:AK109409.2 gb:AK061471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5309011/11Pathogen-related protein, putative, expressed
LOC_Os01g531102/11Pathogen-related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37745.1.S1_at--594--5752Chr01:30847621..30847645 (25 bp)
GACGTGGAGGTGTACTACGACCCAG
LOC_Os01g53110
Os.37745.1.S1_at--677--6972Chr01:30847610..30847634 (25 bp)
GTACTACGACCCAGGCGAGCTACTG
LOC_Os01g53110
Os.37745.1.S1_at--217--1651Chr01:30839333..30839357 (25 bp)
AGCCGAATAGCGAAACGTGCCCCGT
LOC_Os01g53090
Os.37745.1.S1_at--318--6751Chr01:30839310..30839334 (25 bp)
GTTCATCTGTCGTCGCTGTAACCGC
LOC_Os01g53090
Os.37745.1.S1_at--144--4271Chr01:30839285..30839309 (25 bp)
CCGGCGTTTCGCCATCATGATGGAG
LOC_Os01g53090
Os.37745.1.S1_at--864--7451Chr01:30839261..30839285 (25 bp)
GGTGACACCGGCTGAAAACGTTTAT
LOC_Os01g53090
Os.37745.1.S1_at--816--2371Chr01:30839246..30839270 (25 bp)
AAACGTTTATTTGCTCGTGTGTAGC
LOC_Os01g53090
Os.37745.1.S1_at--8--9111Chr01:30839235..30839259 (25 bp)
TGCTCGTGTGTAGCGTGTGTGCTTA
LOC_Os01g53090
Os.37745.1.S1_at--161--9851Chr01:30839201..30839225 (25 bp)
TAAATGCTTTGTACGATTCGGTTGG
LOC_Os01g53090
Os.37745.1.S1_at--43--7931Chr01:30839182..30839206 (25 bp)
GGTTGGATTTTAAAGCTGGCGTCAC
LOC_Os01g53090
Os.37745.1.S1_at--724--2351Chr01:30839171..30839195 (25 bp)
AAAGCTGGCGTCACAACGCCTGACT
LOC_Os01g53090
Target Sequence 
GACGTGGAGGTGTACTACGACCCAGGCGAGCTACTGGGGGGCCTTCTCAAGGGGCCCCTGCTGGTGCCGTCCGCGGAGGA
GGAGGACGCGCGTCAGCTCGGCGAGAGGCTCGGCGAGGCGGCTATCGTGTCGGCGTCAGGCGCGGCCCCGCAGTCGCAGG
CCTGCCCCTTTCTCGCCTCCGCGAAGCGGGAGGAGTGAAAGGGACCGATCGAGCGGCGACGACATGGTCGAGCCGAATAG
CGAAACGTGCCCCGTTCATCTGTCGTCGCTGTAACCGCCCGGCGTTTCGCCATCATGATGGAGGTGACACCGGCTGAAAA
CGTTTATTTGCTCGTGTGTAGCGTGTGTGCTTATGGTGTTGTTAAATGCTTTGTACGATTCGGTTGGATTTTAAAGCTGG
CGTCACAACGCCTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis