Browse Element(s) Details


Os.6679.1.S1_at

Description gb:AU164892
DB_XREF= gi:11233480
DB_XREF=AU164892
CLONE=E61720
TID=Os.6679.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435H01.30 (P0435H01.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5314010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6679.1.S1_at--372--511NONE
ATCGTCCGTGAATTCCACATGCAAG
NONE
Os.6679.1.S1_at--69--6311Chr01:30863283..30863307 (25 bp)
GATGAGGATGCTGGAAGACCACCGA
LOC_Os01g53140
Os.6679.1.S1_at--983--1371Chr01:30863298..30863322 (25 bp)
AGACCACCGAGGAAGTTCTTGTAAG
LOC_Os01g53140
Os.6679.1.S1_at--1133--9711Chr01:30863319..30863343 (25 bp)
TAAGTTGTAACCAGCCAGAATCATG
LOC_Os01g53140
Os.6679.1.S1_at--807--4411Chr01:30863332..30863356 (25 bp)
GCCAGAATCATGCTAGTTTTGTTTT
LOC_Os01g53140
Os.6679.1.S1_at--423--5591Chr01:30863359..30863383 (25 bp)
GAAATAAATGCCTTTACCACACGGC
LOC_Os01g53140
Os.6679.1.S1_at--578--1811Chr01:30863386..30863410 (25 bp)
ACCCTGGCGATTCCAATCTGAGAAA
LOC_Os01g53140
Os.6679.1.S1_at--797--811Chr01:30863412..30863436 (25 bp)
ATGGTGACACTCAGTTCTGCACTTC
LOC_Os01g53140
Os.6679.1.S1_at--739--9791Chr01:30863443..30863467 (25 bp)
TAAGCTTTTAGCTGCTGTGCTCTGC
LOC_Os01g53140
Os.6679.1.S1_at--905--9091Chr01:30863460..30863484 (25 bp)
TGCTCTGCTCCAAGTTTTGTTCTGA
LOC_Os01g53140
Os.6679.1.S1_at--325--4391Chr01:30863538..30863562 (25 bp)
GCCAATCCAAACACTATCTTAATCG
LOC_Os01g53140
Target Sequence 
ATCGTCCGTGAATTCCACATGCAAGATGAGGATGCTGGAAGACCACCGAGGAAGTTCTTGTAAGTTGTAACCAGCCAGAA
TCATGCTAGTTTTGTTTTAAGAAATAAATGCCTTTACCACACGGCACACCCTGGCGATTCCAATCTGAGAAACATGGTGA
CACTCAGTTCTGCACTTCTGNCTTGTAAGCTTTTAGCTGCTGTGCTCTGCTCCAAGTTTTGTTCTGAGGTATACCTATGN
NACCACCGTTATATCNANGAACTACTCTCTTCCNGCATTTANAGCCAATCCAAACACTATCTTAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis