Browse Element(s) Details


Os.55598.1.S1_at

Description gb:AK108391.1
DB_XREF= gi:32993600
TID=Os.55598.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F05, full insert sequence.
FL= gb:AK108391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5316011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55598.1.S1_at--660--5771Chr01:30870302..30870326 (25 bp)
GACGAGGACTCGAGGAACCTCTTCT
LOC_Os01g53160
Os.55598.1.S1_at--470--4071Chr01:30870346..30870370 (25 bp)
CGACTCGTCGGACTTCTACAACTGC
LOC_Os01g53160
Os.55598.1.S1_at--748--1371Chr01:30870453..30870477 (25 bp)
AGAGCTGCCGGTACAGCTTCGAGCT
LOC_Os01g53160
Os.55598.1.S1_at--611--9131Chr01:30870642..30870666 (25 bp)
TGCTGGAGACCTACCTCGTGCTCAA
LOC_Os01g53160
Os.55598.1.S1_at--650--9131Chr01:30870711..30870735 (25 bp)
TGCGGGAGACGCTTTTCCCCTGAAT
LOC_Os01g53160
Os.55598.1.S1_at--493--8351Chr01:30870772..30870796 (25 bp)
GGCGGTGTGATGTTCATAGGACTAA
LOC_Os01g53160
Os.55598.1.S1_at--354--5711Chr01:30870791..30870815 (25 bp)
GACTAACTTCCATGTCAATGTCAGT
LOC_Os01g53160
Os.55598.1.S1_at--1132--1191Chr01:30870833..30870857 (25 bp)
AGTTGAGCGGTTGAGCCTGTGACTT
LOC_Os01g53160
Os.55598.1.S1_at--181--8931Chr01:30870844..30870868 (25 bp)
TGAGCCTGTGACTTCCTGTGTGTAC
LOC_Os01g53160
Os.55598.1.S1_at--804--7471Chr01:30870861..30870885 (25 bp)
GTGTGTACTTTCATGAATGCATCGT
LOC_Os01g53160
Os.55598.1.S1_at--1024--631Chr01:30870877..30870901 (25 bp)
ATGCATCGTTTGTGTCATTTCACCG
LOC_Os01g53160
Target Sequence 
GACGAGGACTCGAGGAACCTCTTCTCCTCCAGGAGCTTTTCCTCCGACTCGTCGGACTTCTACAACTGCCCGCGCAAGAA
CACCAGGGCGCGCGCCTCAGTGTCCGGCCCGTGCCGCGCGCCGCCGCCATCCTCGCGCCGCGGCACGTCGCAGAGCTGCC
GGTACAGCTTCGAGCTTCCGCGCGGCTCGACGGCTTCGGCGGCAACCGACGGCGGGTTCGCGGTGGTGAAGCGGTCGTCC
GACCCCTACGAGGACTTCCGCAAATCAATGGAGGAGATGATCGCCGAGGGGGCGGCGTGCGGCGGCGGCGACGGCGACGG
GGAGCTCAGCGNGGAGCGGCTGCTGGAGACCTACCTCGTGCTCAACTCGCCGCGGCATTACCCCGCGATCCTCGCGGCGT
TCGCCGACGTGCGGGAGACGCTTTTCCCCTGAATCCGTCGACCGATCGGCCTGCACCGCCGCACCGGCGTGGCGGTGTGA
TGTTCATAGGACTAACTTCCATGTCAATGTCAGTAAGATTAGTAGCACAAGAGTTGAGCGGTTGAGCCTGTGACTTCCTG
TGTGTACTTTCATGAATGCATCGTTTGTGTCATTTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis