Browse Element(s) Details


Os.35681.1.S1_at

Description gb:AY344493.1
DB_XREF= gi:33591115
TID=Os.35681.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35681 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
PROD=heat shock factor RHSF11
FL= gb:AK066316.1 gb:AY344493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5322011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35681.1.S1_at--464--9111Chr01:30909912..30909936 (25 bp)
TGCTGCCGCGGATCGTGCGCAAGAA
LOC_Os01g53220
Os.35681.1.S1_at--449--5891Chr01:30910052..30910076 (25 bp)
GAGCTCCAGGCCATGGACCAGAGGC
LOC_Os01g53220
Os.35681.1.S1_at--328--7551Chr01:30910099..30910123 (25 bp)
GGGCCAGATGATGGCGTTCCTCGCC
LOC_Os01g53220
Os.35681.1.S1_at--960--2452Chr07:1713994..1714018 (25 bp)
AACAACGGGTCCGATCCCTGCAAGA
NONE
Os.35681.1.S1_at--908--6731Chr01:30910322..30910346 (25 bp)
GTTCTTGGCCAAGTGTTCTACTAGC
LOC_Os01g53220
Os.35681.1.S1_at--432--1111Chr01:30910333..30910357 (25 bp)
AGTGTTCTACTAGCCGCAACAGGGC
LOC_Os01g53220
Os.35681.1.S1_at--161--5151Chr01:30910348..30910372 (25 bp)
GCAACAGGGCCAGATAGGTGTACAC
LOC_Os01g53220
Os.35681.1.S1_at--182--291Chr01:30910361..30910385 (25 bp)
ATAGGTGTACACGTACGCAGTCCCC
LOC_Os01g53220
Os.35681.1.S1_at--11--2471Chr01:30910398..30910422 (25 bp)
AACAACAGTGTAACTTCGCCTCGGT
LOC_Os01g53220
Os.35681.1.S1_at--1155--4431Chr01:30910415..30910439 (25 bp)
GCCTCGGTTTAGTTGCCTACTGTTA
LOC_Os01g53220
Os.35681.1.S1_at--340--8491Chr01:30910471..30910495 (25 bp)
TGGCTAAGTAGCTATCGTTGGATTT
LOC_Os01g53220
Target Sequence 
TGCTGCCGCGGATCGTGCGCAAGAAGAAGAAGGGCGGGGCGGCGCCGGGGTGCAGGGAGCTGTGCGAGGAAGGGGAGGAG
GTGCGGGGCACCATCGAGGCGGTGCAGCGGCTGCGGGAGGAGCAGAGGGGCATGGAGGAGGAGCTCCAGGCCATGGACCA
GAGGCTGCGCGCCGCCGAGAGCCGCCCGGGCCAGATGATGGCGTTCCTCGCCAAGCTCGCCGACGAACCGGGCGTCGTGC
TGCGCGCCATGCTCGCCAAGAAGGAGGAGCTGGCCGCGGCCGGCAACAACGGGTCCGATCCCTGCAAGAGGCGGCGGATC
GGGGCCGACACGGGGCGCGGCGGCGTGGCGACCGGCGGCGACGCGGCCGAGATGGCGCAGAGCAGAGGCACCGTGCCGTT
CCCGTTCTCTGTTCTTGGCCAAGTGTTCTACTAGCCGCAACAGGGCCAGATAGGTGTACACGTACGCAGTCCCCCGTTGT
ATATATAACAACAGTGTAACTTCGCCTCGGTTTAGTTGCCTACTGTTAAGTTAGTGTACTTAAGCATAATAGGAGAGTTT
GGCTAAGTAGCTATCGTTGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis