Browse Element(s) Details


Os.8061.1.S1_at

Description gb:AK065358.1
DB_XREF= gi:32975376
TID=Os.8061.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.8061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dehydration-responsive protein RD22 precursor (OSJNBb0036G09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full insert sequence.
FL= gb:AK065358.1 gb:AK059056.1 gb:AK106043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5324011/11RD22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8061.1.S1_at--766--9331Chr01:30918788..30918812 (25 bp)
TCGCCGGAGCAGGAGTACACCGTGA
LOC_Os01g53240
Os.8061.1.S1_at--286--9091Chr01:30919029..30919053 (25 bp)
TGCTCAAGGTGAAGCCAGGCACGGT
LOC_Os01g53240
Os.8061.1.S1_at--140--1911Chr01:30919083..30919107 (25 bp)
ACGTCGTCTGGACACGCAGCGGCTA
LOC_Os01g53240
Os.8061.1.S1_at--946--8291Chr01:30919103..30919127 (25 bp)
GGCTAGCTGATGATCGGCTGCCAAT
LOC_Os01g53240
Os.8061.1.S1_at--849--491Chr01:30919115..30919139 (25 bp)
ATCGGCTGCCAATCTTGGCGCCTGA
LOC_Os01g53240
Os.8061.1.S1_at--1148--4551Chr01:30919132..30919156 (25 bp)
GCGCCTGATCGAGTTGGTTGCTTAT
LOC_Os01g53240
Os.8061.1.S1_at--1119--10011Chr01:30919161..30919185 (25 bp)
TAGAATCTAGCTAGGCTCCATGCAG
LOC_Os01g53240
Os.8061.1.S1_at--253--1971Chr01:30919193..30919217 (25 bp)
ACTGTATGGTGTCTTACTATCTTAC
LOC_Os01g53240
Os.8061.1.S1_at--1000--10191Chr01:30919219..30919243 (25 bp)
TATTTGTATGCACGCAATTTGGTTC
LOC_Os01g53240
Os.8061.1.S1_at--91--551Chr01:30919270..30919294 (25 bp)
ATCGCCAGCCTGCTAGTAGATGATA
LOC_Os01g53240
Os.8061.1.S1_at--298--6891Chr01:30919316..30919340 (25 bp)
GTATAGTTTTAGTATGCGGGTGCAA
LOC_Os01g53240
Target Sequence 
TCGCCGGAGCAGGAGTACACCGTGACGGCGGTGAAGCGCGCGGCGGCCGGCGGCGACCAGGACCAGCTCGTCGCCTGCCA
CGCGGAGCCGTACGCGTACGCCGTGTTCGCGTGCCACCTGACGCGGGCGACGCGGGCGTACGCGGTGTCGATGGCCGGCA
GGGACGGCACGGGCGTGGAGGCCGTCGCGGTGTGCCACGCCGACACGGCCGGGTGGAACCCGAAGCACGTCGCGTTCCAG
GTGCTCAAGGTGAAGCCAGGCACGGTGCCGGTCTGCCACTTCCTGCCGCAGGACCACGTCGTCTGGACACGCAGCGGCTA
GCTGATGATCGGCTGCCAATCTTGGCGCCTGATCGAGTTGGTTGCTTATGCTCTAGAATCTAGCTAGGCTCCATGCAGAT
GCTATACTGTATGGTGTCTTACTATCTTACATATTTGTATGCACGCAATTTGGTTCTTTGTTATTTGGATGGTGTTGCCA
GCATCGCCAGCCTGCTAGTAGATGATACGGGTGGGCTTGCTGTTTGATGTATAGTTTTAGTATGCGGGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis