Browse Element(s) Details


OsAffx.11583.1.S1_at

Description tigr:9629.m05175
TID=OsAffx.11583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5321011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g53210OsAffx.11583.1.S1_at11/111+30900983..30903135expressed protein
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11583.1.S1_at--507--6031Chr01:30901479..30901503 (25 bp)
GAGATGATAACACAAGCCACTTCCA
LOC_Os01g53210
OsAffx.11583.1.S1_at--956--2051Chr01:30901461..30901485 (25 bp)
ACTTCCATCCTTCGGTAGCAATGTT
LOC_Os01g53210
OsAffx.11583.1.S1_at--1082--1471Chr01:30901445..30901469 (25 bp)
AGCAATGTTGCCTCCATCGGTCTTA
LOC_Os01g53210
OsAffx.11583.1.S1_at--1020--7691Chr01:30901407..30901431 (25 bp)
GGGTCTAGGTGGTATTCAGCCTCAA
LOC_Os01g53210
OsAffx.11583.1.S1_at--1115--1631Chr01:30901375..30901399 (25 bp)
AGCGAATATTCTTTTGCCACGTTAG
LOC_Os01g53210
OsAffx.11583.1.S1_at--1059--10371Chr01:30901364..30901388 (25 bp)
TTTTGCCACGTTAGCTAGCCACGCG
LOC_Os01g53210
OsAffx.11583.1.S1_at--696--10233Chr05:24830025..24830048 (24 bp)
TTTGGCTACGCGTTCTTCGTCTCAG
NONE
OsAffx.11583.1.S1_at--1139--9391Chr01:30901298..30901322 (25 bp)
TCGTCTCAGCGGGTCCACAGATGGG
LOC_Os01g53210
OsAffx.11583.1.S1_at--939--7631Chr01:30901276..30901300 (25 bp)
GGGACCCACACTGCCGCTAGATGAG
LOC_Os01g53210
OsAffx.11583.1.S1_at--311--2892Chr05:6729201..6729225 (25 bp)
AAGGTCGCGCCGATTTCCTTGAGCG
NONE
OsAffx.11583.1.S1_at--402--10291Chr01:30901119..30901143 (25 bp)
TTTCCTTGAGCGCACGAAGGCTGAA
LOC_Os01g53210
Target Sequence 
GAGATGATAACACAAGCCACTTCCATCCTTCGGTAGCAATGTTGCCTCCATCGGTCTTAGGCCATTCACAATGGGTCTAG
GTGGTATTCAGCCTCAACCAAAAAAGCGAATATTCTTTTGCCACGTTAGCTAGCCACGCGCGCGCCTCATCTCCGCGTAG
CCAACTTTGGCTACGCGTTCTTCGTCTCAGCGGGTCCACAGATGGGACCCACACTGCCGCTAGATGAGAGAGGGGAGAGG
GGAGAGGGAAGAGGGGCGAGGCAGCCGAGCGGCAGGGGAGGATGGTGCTGACCGACGCCGACGCCTGCCGACGCGCAGCC
ACTCCTCGCCGGATCCTGCCGCCTACCAAGGTCGCGCCGATTTCCTTGAGCGCACGAAGGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis