Browse Element(s) Details


Os.9136.2.A1_at

Description gb:AK066820.1
DB_XREF= gi:32976838
TID=Os.9136.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1085F01.26 (B1085F01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013086C21, full insert sequence.
FL= gb:AK066820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4193010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9136.2.A1_at--691--2091Chr01:24106038..24106062 (25 bp)
ACATCGGCAACCCAGGTCTTTGTGG
LOC_Os01g41930
Os.9136.2.A1_at--986--7491Chr01:24106059..24106083 (25 bp)
GTGGTTATCCCCTTGCAAAGAATTG
LOC_Os01g41930
Os.9136.2.A1_at--981--7611Chr01:24106094..24106118 (25 bp)
GGGACATCTCAAGGTCAAACCGTTA
LOC_Os01g41930
Os.9136.2.A1_at--401--6251Chr01:24106130..24106154 (25 bp)
GATGGTTCGTTCTGTGCTGGTCTCA
LOC_Os01g41930
Os.9136.2.A1_at--880--7891Chr01:24106183..24106207 (25 bp)
GGTTCTTGCGTCACTTTTGTTCAAG
LOC_Os01g41930
Os.9136.2.A1_at--553--6811Chr01:24106219..24106243 (25 bp)
GTTTTCTTACTTTCACCACTTTGAT
LOC_Os01g41930
Os.9136.2.A1_at--429--791Chr01:24106263..24106287 (25 bp)
ATGTGTTTCTTACTGTCACTTCAGC
LOC_Os01g41930
Os.9136.2.A1_at--386--9691Chr01:24106278..24106302 (25 bp)
TCACTTCAGCGATATACCTCCAAAA
LOC_Os01g41930
Os.9136.2.A1_at--410--5411NONE
GAAGCTGAGTGGTTTCCTACATATA
NONE
Os.9136.2.A1_at--580--8171Chr01:24106429..24106453 (25 bp)
GGAACTTCTCGATATCTTCTCAAGG
LOC_Os01g41930
Os.9136.2.A1_at--831--10211Chr01:24106506..24106530 (25 bp)
TATTAGCCCATGTGTGGCTCTCTAT
LOC_Os01g41930
Target Sequence 
ACATCGGCAACCCAGGTCTTTGTGGTTATCCCCTTGCAAAGAATTGTCCTGAAAATGGGACATCTCAAGGTCAAACCGTT
AAAAGTCATCACGATGGTTCGTTCTGTGCTGGTCTCAGTGTGGGGTTTGTGATTGGAGTTTGGATGGTTCTTGCGTCACT
TTTGTTCAAGAAGAGTTGGAGGTTTTCTTACTTTCACCACTTTGATAGGCAGTATGACAGATTGAATGTGTTTCTTACTG
TCACTTCAGCGATATACCTCCAAAAGGCTACACGATTTAAGGATGGAAGAAGCTGAGTGGTTTCCTACATATAAGGGCTT
TCTACCTGAGAAAATTTTCTCGTACTTGAGAAGGTACCGAGAGCTACTATATTTTCTAGACTAAAAAATGTGGAACTTCT
CGATATCTTCTCAAGGATCATCTAATCAATCGGAAGTTGAAAAATAATCCTACATTACATCTTTGTAATATTAGCCCATG
TGTGGCTCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9136.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis