Browse Element(s) Details


Os.30203.1.S1_at

Description gb:AK099765.1
DB_XREF= gi:32984974
TID=Os.30203.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1085F01.27 (B1085F01.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094O21, full insert sequence.
FL= gb:AK099765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4195011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41980OsAffx.2212.3.A1_at11/111+24132972..24135701hypothetical protein
LOC_Os01g41980Os.32118.2.S1_x_at1/111+24132972..24135701hypothetical protein
LOC_Os01g41990Os.6024.1.S1_at10/111+24136996..24138405EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30203.1.S1_at--1093--8511Chr01:24112038..24112062 (25 bp)
TGGACACTGGCACCATGGAGTTCTC
LOC_Os01g41950
Os.30203.1.S1_at--9--6071Chr01:24112055..24112079 (25 bp)
GAGTTCTCCGTGTATGAGTTCCCAA
LOC_Os01g41950
Os.30203.1.S1_at--859--6691Chr01:24112072..24112096 (25 bp)
GTTCCCAATATACTCTAAGCTCGTG
LOC_Os01g41950
Os.30203.1.S1_at--992--4971Chr01:24112134..24112158 (25 bp)
GCATCCCTTGCATTGCTTATGTCAA
LOC_Os01g41950
Os.30203.1.S1_at--826--1731Chr01:24112166..24112190 (25 bp)
ACCATTGTTGTGTTGATCCGCAGAT
LOC_Os01g41950
Os.30203.1.S1_at--652--8531Chr01:24112217..24112241 (25 bp)
TGGAGGTTTGTCGACGGCGTCAATT
LOC_Os01g41950
Os.30203.1.S1_at--116--1871Chr01:24112245..24112269 (25 bp)
ACGACGAGGCGGACCAACTGGGTAT
LOC_Os01g41950
Os.30203.1.S1_at--145--991Chr01:24112299..24112323 (25 bp)
AGGATGGCTTTGTGTACCTGGCCGC
LOC_Os01g41950
Os.30203.1.S1_at--852--711Chr01:24112331..24112355 (25 bp)
ATGATCCTTTCGCTCTGCTTAGAAA
LOC_Os01g41950
Os.30203.1.S1_at--868--6831Chr01:24112375..24112399 (25 bp)
GTTTCCAATGAGTTTCCAGTTCCCT
LOC_Os01g41950
Os.30203.1.S1_at--916--831Chr01:24112415..24112439 (25 bp)
ATGGCGTGGCCTCCTACTTTGGTAG
LOC_Os01g41950
Target Sequence 
TGGACACTGGCACCATGGAGTTCTCCGTGTATGAGTTCCCAATATACTCTAAGCTCGTGCAAGGTTGTAGCTTNCGGTGT
CGGCGAGACCAAAGACGGCATCCCTTGCATTGCTTATGTCAATGGAGCCACCATTGTTGTGTTGATCCGCAGATTCGACA
AGAAGCAGGGTGTTCAGGGNTGGAGGTTTGTCGACGGCGTCAATTGCGACGACGAGGCGGACCAACTGGGTATTAATGGT
GGGCTTGATGNGGTGGCCATAAAGGATGGCTTTGTGTACCTGGCCGCGACAGGGATGATCCTTTCGCTCTGCTTAGAAAC
AAGGAAGCTTGAGAAGCTGTTTCCAATGAGTTTCCAGTTCCCTCTCCATCCCTACATCATGGCGTGGCCTCCTACTTTGG
TAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis