Browse Element(s) Details


Os.22783.1.S1_s_at

Description gb:AK060054.1
DB_XREF= gi:32970072
TID=Os.22783.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full insert sequence.
FL= gb:AK104639.1 gb:AK060054.1 gb:AK098879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3175011/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22783.1.S1_s_at--276--2931Chr05:18413765..18413789 (25 bp)
AAGGAAATCCATGGCCGCCACATCG
LOC_Os05g31750
Os.22783.1.S1_s_at--312--8471Chr05:18413686..18413778 (25 bp)
TGGCCGCCACATCGAAGAGGATCTT
LOC_Os05g31750
Os.22783.1.S1_s_at--419--2091Chr05:18413678..18413770 (25 bp)
ACATCGAAGAGGATCTTGGGCACGA
LOC_Os05g31750
Os.22783.1.S1_s_at--359--6431Chr05:18413667..18413691 (25 bp)
GATCTTGGGCACGAGGAGACACTGA
LOC_Os05g31750
Os.22783.1.S1_s_at--229--10811Chr05:18413343..18413367 (25 bp)
TTGTCAGTGCGTCGCCATCGTGTAC
LOC_Os05g31750
Os.22783.1.S1_s_at--809--1131Chr05:18413338..18413362 (25 bp)
AGTGCGTCGCCATCGTGTACGTTGT
LOC_Os05g31750
Os.22783.1.S1_s_at--504--6671Chr05:18413283..18413307 (25 bp)
GTTGCATGCGTGGATCGAGACTTGT
LOC_Os05g31750
Os.22783.1.S1_s_at--821--4651Chr05:18413276..18413300 (25 bp)
GCGTGGATCGAGACTTGTAAACTTA
LOC_Os05g31750
Os.22783.1.S1_s_at--199--8751Chr05:18413261..18413285 (25 bp)
TGTAAACTTAGCATTTCGCAGCAGA
LOC_Os05g31750
Os.22783.1.S1_s_at--937--3651Chr05:18413255..18413279 (25 bp)
CTTAGCATTTCGCAGCAGAGCTGTT
LOC_Os05g31750
Os.22783.1.S1_s_at--707--5051Chr05:18413244..18413268 (25 bp)
GCAGCAGAGCTGTTGGTATGGAATA
LOC_Os05g31750
Target Sequence 
AAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGAC
GCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGCGGCGGTGAGCGACGGCGCCGACCACCACGCGAAGGAGGCGCTGACGC
GGGTGGCGGTGACGCGGGCGGACGTGGACATGGACGCCATCCGCGCGGCCTACCACGAGCAGTTCGGCGGGAGGCTGGAG
GACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGNGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGACCCGGCCG
ATCAGCCATTGCTCCTCCGATCTGTCGCCTCGCCTTGTCAGTGCGTCGCCATCGTGTACGTTGTTGNTGNTGCTGTTGTT
GTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGACTTGTAAACTTAGCATTTCGCAGCAGAGCTGTTGGTATGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22783.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis