Browse Element(s) Details


Os.22834.1.S1_at

Description gb:AK073725.1
DB_XREF= gi:32983748
TID=Os.22834.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061L20, full insert sequence.
FL= gb:AK073725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1413011/11Shaggy-related protein kinase eta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14100OsAffx.26082.3.A1_at5/112+7695473..7700292retrotransposon protein, putative, unclassified
LOC_Os02g14110Os.4167.1.S1_at10/112+7706618..7711164Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os02g14120Os.50286.1.S1_at11/112+7711096..7715738BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os02g14130Os.22834.1.S1_at11/112+7718959..7723686Shaggy-related protein kinase eta, putative, expressed
LOC_Os02g14140OsAffx.24242.4.S1_x_at2/112+7733271..7733966hypothetical protein
LOC_Os02g14140OsAffx.24242.5.S1_x_at1/112+7733271..7733966hypothetical protein
LOC_Os02g14150Os.55414.1.S1_at1/112+7743037..7746697hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0042538biological_processhyperosmotic salinity response
GO:0004672molecular_functionprotein kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22834.1.S1_at--849--5891Chr02:7719481..7719505 (25 bp)
GAGCTGGCGCCAATGTGTTATATGA
LOC_Os02g14130
Os.22834.1.S1_at--386--10091Chr02:7719445..7719469 (25 bp)
TAGGCACAGCCAACCCATGTTAATT
LOC_Os02g14130
Os.22834.1.S1_at--1106--9751Chr02:7719420..7719444 (25 bp)
TAATGCTTCTCCTCCATTATTAGGA
LOC_Os02g14130
Os.22834.1.S1_at--646--8751Chr02:7719296..7719320 (25 bp)
TGTACTACTTTCTCCCACGATTAAT
LOC_Os02g14130
Os.22834.1.S1_at--1029--1871Chr02:7719280..7719304 (25 bp)
ACGATTAATGTTGTAGTGCCCCTGT
LOC_Os02g14130
Os.22834.1.S1_at--145--1131Chr02:7719266..7719290 (25 bp)
AGTGCCCCTGTAAGTGTTTCTCATG
LOC_Os02g14130
Os.22834.1.S1_at--508--10311Chr02:7719250..7719274 (25 bp)
TTTCTCATGCCCTATTGTCGATGTA
LOC_Os02g14130
Os.22834.1.S1_at--790--451Chr02:7719199..7719223 (25 bp)
ATCTCTTGTTATGATACCCCATGCC
LOC_Os02g14130
Os.22834.1.S1_at--513--7871Chr02:7719145..7719169 (25 bp)
GGTTTCCTCTACCATATGGTTCAGA
LOC_Os02g14130
Os.22834.1.S1_at--990--1351Chr02:7719123..7719147 (25 bp)
AGAGAACTTTCCTCATCTGTTGGCT
LOC_Os02g14130
Os.22834.1.S1_at--344--1051Chr02:7718986..7719010 (25 bp)
AGGTGTCTGCACCAATCCTATATTG
LOC_Os02g14130
Target Sequence 
GAGCTGGCGCCAATGTGTTATATGAGGTGGGTGTGCTAGGCACAGCCAACCCATGTTAATTTAATGCTTCTCCTCCATTA
TTAGGAGGCCATGGTGGTCAGGATTAGCCAAGTACTGTGGGGATAGCTGGAGGGAATGGGGATGGTGTATTGTTAAGCTA
TTGAAAGGGATCAGATCCCAAGTACTGTACTACTTTCTCCCACGATTAATGTTGTAGTGCCCCTGTAAGTGTTTCTCATG
CCCTATTGTCGATGTAATTGTGTAAATGTTCCTAATGGAAAAATCTCTTGTTATGATACCCCATGCCCAAACTTGTTTAC
CCCCCCCCCCCTACTGGTTTCCTCTACCATATGGTTCAGAGAACTTTCCTCATCTGTTGGCTGCAAAGATGAATGTTGTG
ATTATCATTGTCACTGGAATACTAGGATAAAATTGTTGATAAATGAGTAATATATTTGAGGTCTGCATTTGTGAGTTGTG
TAAGGATTTAAGGCAGGTGTCTGCACCAATCCTATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis