Browse Element(s) Details


OsAffx.26082.3.A1_at

Description tigr:9636.m00908
TID=OsAffx.26082.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g141005/11retrotransposon protein, putative, unclassified
LOC_Os02g542801/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14040OsAffx.2606.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.1436.1.S1_x_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_x_at1/112+7671940..7672764hypothetical protein
LOC_Os02g14059Os.13546.1.S1_at11/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14059Os.28346.3.S1_x_at1/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14080NANA2+7689510..7689752hypothetical protein
LOC_Os02g14090OsAffx.11451.6.S1_s_at11/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14090OsAffx.11451.4.S1_x_at1/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14100OsAffx.26082.3.A1_at5/112+7695473..7700292retrotransposon protein, putative, unclassified
LOC_Os02g14110Os.4167.1.S1_at10/112+7706618..7711164Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os02g14120Os.50286.1.S1_at11/112+7711096..7715738BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os02g14130Os.22834.1.S1_at11/112+7718959..7723686Shaggy-related protein kinase eta, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26082.3.A1_at--149--10794Chr08:6421965..6421989 (25 bp)
TTGATATTCTTCATCATGCCCATAT
NONE
OsAffx.26082.3.A1_at--860--9614Chr08:5520397..5520421 (25 bp)
TCATGCCCATATTGACGAAGTTCTT
NONE
OsAffx.26082.3.A1_at--509--6513Chr08:5520428..5520452 (25 bp)
GATATTGATATGCTTGCCCCTCGAG
NONE
OsAffx.26082.3.A1_at--434--5253Chr08:5520455..5520479 (25 bp)
GAATCTTTTGAGCAACTATTTCAGG
NONE
OsAffx.26082.3.A1_at--535--8174Chr08:6422059..6422083 (25 bp)
GGAACTATCTTCTTGATCACATCTT
NONE
OsAffx.26082.3.A1_at--258--393Chr08:6422074..6422098 (25 bp)
ATCACATCTTGTAGTGTACTCATCA
NONE
OsAffx.26082.3.A1_at--1153--7434Chr08:6422087..6422111 (25 bp)
GTGTACTCATCAAAACTCCAGACTG
NONE
OsAffx.26082.3.A1_at--504--3054Chr08:6422179..6422203 (25 bp)
AATCGAGTCTTCTGAATTGGCCCTT
NONE
OsAffx.26082.3.A1_at--108--8478Chr08:6422196..6422220 (25 bp)
TGGCCCTTCTGGTGTCATGATGAAA
NONE
OsAffx.26082.3.A1_at--200--5771Chr08:5520647..5520671 (25 bp)
GACGACGCATTTGAAAATCAGCTAC
NONE
OsAffx.26082.3.A1_at--877--3075Chr08:5520662..5520686 (25 bp)
AATCAGCTACAAACTGCTCCATCTG
NONE
Target Sequence 
TTGATATTCTTCATCATGCCCATATTGACGAAGTTCTTCTGGCCGATATTGATATGCTTGCCCCTCGAGCTGAATCTTTT
GAGCAACTATTTCAGGAACTATCTTCTTGATCACATCTTGTAGTGTACTCATCAAAACTCCAGACTGATCAAATAATGCG
CGATGAACCGCTTCATCAACTGTATCTTGAAGTATTTCAACTATCAGCTTGGGGAATCGAGTCTTCTGAATTGGCCCTTC
TGGTGTCATGATGAAACATTGAAGACGACGCATTTGAAAATCAGCTACAAACTGCTCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26082.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis