Browse Element(s) Details


OsAffx.11451.6.S1_s_at

Description tigr:9630.m01307
TID=OsAffx.11451.6
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CPRD2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1409011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14040OsAffx.2606.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.1436.1.S1_x_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_x_at1/112+7671940..7672764hypothetical protein
LOC_Os02g14059Os.13546.1.S1_at11/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14059Os.28346.3.S1_x_at1/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14080NANA2+7689510..7689752hypothetical protein
LOC_Os02g14090OsAffx.11451.6.S1_s_at11/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14090OsAffx.11451.4.S1_x_at1/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14100OsAffx.26082.3.A1_at5/112+7695473..7700292retrotransposon protein, putative, unclassified
LOC_Os02g14110Os.4167.1.S1_at10/112+7706618..7711164Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os02g14120Os.50286.1.S1_at11/112+7711096..7715738BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11451.6.S1_s_at--116--7911Chr02:7691612..7691636 (25 bp)
GGATACCGGAATCCGGCACGCCGTA
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--943--1811Chr02:7691629..7691653 (25 bp)
ACGCCGTACGCTCACCGGAGCGGAT
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--330--4991Chr02:7691742..7691766 (25 bp)
GCATGAGCTGATGACACCCTATGTG
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--783--8951Chr02:7691753..7691777 (25 bp)
TGACACCCTATGTGAGCAAGAACCC
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--872--7511Chr02:7691917..7691941 (25 bp)
GTGGATCCTGATCAGCTGTTCTGGA
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--246--10611Chr02:7691935..7691959 (25 bp)
TTCTGGAGTGAGCAGAGCATCCCTC
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--297--3291Chr02:7691972..7691996 (25 bp)
CACAAGGGATGCTGGATTGGTTTCA
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--984--6291Chr02:7692004..7692028 (25 bp)
GATGATGGTTCAGTCTGCAGCTTGA
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--878--3451Chr02:7692014..7692038 (25 bp)
CAGTCTGCAGCTTGATGTATAGTAA
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--961--10371Chr02:7692050..7692074 (25 bp)
TTTTCTTCAGCATATATTTCTCCAA
LOC_Os02g14090
OsAffx.11451.6.S1_s_at--790--231Chr02:7692063..7692087 (25 bp)
ATATTTCTCCAATAATGTGTGCTAG
LOC_Os02g14090
Target Sequence 
GGATACCGGAATCCGGCACGCCGTACGCTCACCGGAGCGGATACCTCTACAACCTGCAATACTTTGTCAAGTGGGGAGGT
GACAAGAATGTGTCCTATGAGGATGATCATCTGAGCTGGGTGAGGGGGTTGCATGAGCTGATGACACCCTATGTGAGCAA
GAACCCCAGGGCTGCATACATCAACTACAGGGACCTGGATTTGGGGCAGAATGTGGAGGGAAACACAAGCTATGAGGAGG
CCAGGGTGTGGGGGGAGAAGTACTTCAGGGGAAACTTCAGGAGGCTGGCAATGGTGAAGGGTGAGGTGGATCCTGATCAG
CTGTTCTGGAGTGAGCAGAGCATCCCTCCTTGGTTGTGAGCACAAGGGATGCTGGATTGGTTTCAGATAGCTGATGATGG
TTCAGTCTGCAGCTTGATGTATAGTAAGAATCTGTGCCTTTTCTTCAGCATATATTTCTCCAATAATGTGTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11451.6.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis