Browse Element(s) Details


Os.22838.1.S1_x_at

Description gb:AK120064.1
DB_XREF= gi:37989687
TID=Os.22838.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0062P14.20 (OSJNBb0062P14.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B02, full insert sequence.
FL= gb:AK120064.1 gb:AK062129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2697411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein
LOC_Os07g27000OsAffx.22355.1.S1_at11/117+15625101..15629991retrotransposon protein, putative, unclassified
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22838.1.S1_x_at--208--9711Chr07:15617582..15617606 (25 bp)
TCAAAGGATCCTACGGCTTGCATCA
LOC_Os07g26974
Os.22838.1.S1_x_at--747--8291Chr07:15617568..15617592 (25 bp)
GGCTTGCATCATCCGGAACCGATAT
LOC_Os07g26974
Os.22838.1.S1_x_at--751--11Chr07:15617545..15617569 (25 bp)
ATCGGGCGGCCCATATTTATTGGAT
LOC_Os07g26974
Os.22838.1.S1_x_at--117--7091Chr07:15617249..15617445 (25 bp)
GTCAAGATTTACTGGCGGTGTACCA
LOC_Os07g26974
Os.22838.1.S1_x_at--902--1371Chr07:15617198..15617222 (25 bp)
AGAGCGTCAAATCTGCGGTCACGTC
LOC_Os07g26974
Os.22838.1.S1_x_at--477--5471Chr07:15616990..15617014 (25 bp)
GAACTCCTGAACATGAACTGCTCTG
LOC_Os07g26974
Os.22838.1.S1_x_at--507--651Chr07:15616950..15616974 (25 bp)
ATGCAGATTTGCTTATTGTTCCTAT
LOC_Os07g26974
Os.22838.1.S1_x_at--968--10791Chr07:15616935..15616959 (25 bp)
TTGTTCCTATGCTAAGACCTTGTTG
LOC_Os07g26974
Os.22838.1.S1_x_at--1149--771Chr07:15616908..15616932 (25 bp)
ATGTGATTCCGGTCAGCTTTATTTG
LOC_Os07g26974
Os.22838.1.S1_x_at--908--3311Chr07:15616874..15616898 (25 bp)
CACATGGGCATGTTTGGTTCTGCTA
LOC_Os07g26974
Os.22838.1.S1_x_at--337--8751Chr07:15616769..15616793 (25 bp)
TGTAAACACATCACTGCTTCATCGC
LOC_Os07g26974
Target Sequence 
TCAAAGGATCCTACGGCTTGCATCATCCGGAACCGATATCGGGCGGCCCATATTTATTGGATGATGTGGCACAGTATTTT
GCAAGAAAGCTTGTTGCTTTCACTATTTTAGATCTTTGGTCACCAATGGCAGCAAATGTCACGATATCTGCACCAAATTA
GGTCAAGATTTACTGGCGGTGTACCAGAAGACCTGCAACCTCTTCTTCCGCAAGAGCGTCAAATCTGCGGTCACGTCTGA
GCAGAAGCAACTGGACATGGCGAAATCTCGATTGCAGAAGCTTGATCAAGCCTGAAGCATCACCGCAACCATTGAACTCC
TGAACATGAACTGCTCTGCTGAATCATATTTACATGCAGATTTGCTTATTGTTCCTATGCTAAGACCTTGTTGTAATGTG
ATTCCGGTCAGCTTTATTTGGGATGACATCACATGGGCATGTTTGGTTCTGCTAAGCTAGAGATTAAATCCCCTCAAAAA
AAAAAAGGCTAGACTGCTAGGGCTAAGGTAGGGTTATTTTTAGTAGCTTTCCTTGTAAACACATCACTGCTTCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22838.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis