Browse Element(s) Details


OsAffx.16432.1.S1_at

Description tigr:9635.m02602
TID=OsAffx.16432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2699010/11hypothetical protein
LOC_Os07g244601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein
LOC_Os07g27000OsAffx.22355.1.S1_at11/117+15625101..15629991retrotransposon protein, putative, unclassified
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16432.1.S1_at--1145--2791Chr07:15624002..15624026 (25 bp)
AAGGCAAGGCCCTGTTGTTGACGTC
LOC_Os07g26990
OsAffx.16432.1.S1_at--759--2951Chr07:15623997..15624021 (25 bp)
AAGGCCCTGTTGTTGACGTCCTCTC
LOC_Os07g26990
OsAffx.16432.1.S1_at--504--1991Chr07:15623948..15623972 (25 bp)
ACTCTCACGGTGGTCCTGCCTTGTG
LOC_Os07g26990
OsAffx.16432.1.S1_at--516--7791Chr07:15623937..15623961 (25 bp)
GGTCCTGCCTTGTGCCACCATTGCA
LOC_Os07g26990
OsAffx.16432.1.S1_at--534--3171NONE
AATTGAGCTTATGAGAAATGTGTAC
NONE
OsAffx.16432.1.S1_at--678--2971Chr07:15623303..15623327 (25 bp)
AATGTGTACAAACTTCTTGGTGGTC
LOC_Os07g26990
OsAffx.16432.1.S1_at--148--2531Chr07:15623297..15623317 (21 bp)
AACTTCTTGGTGGTCTTCACGCATT
LOC_Os07g26990
OsAffx.16432.1.S1_at--606--7811Chr07:15622987..15623306 (25 bp)
GGTCTTCACGCATTTAACGAGTTCA
LOC_Os07g26990
OsAffx.16432.1.S1_at--713--2571Chr07:15622972..15622996 (25 bp)
AACGAGTTCAATGCAGGGAATTTGG
LOC_Os07g26990
OsAffx.16432.1.S1_at--949--5012Chr07:13932456..13932481 (24 bp)
GCAGGGAATTTGGATGAGCTGATTA
LOC_Os07g24460
OsAffx.16432.1.S1_at--439--5931Chr07:15622928..15622952 (25 bp)
GAGCATTGCAAGGAACCATATCTTC
LOC_Os07g26990
Target Sequence 
AAGGCAAGGCCCTGTTGTTGACGTCCTCTCTTCCGCCGGTATCACCACTTCACCACTCTCACGGTGGTCCTGCCTTGTGC
CACCATTGCAAGGGGCTCTCACAATCAGAGAGGAAATTGAGCTTATGAGAAATGTGTACAAACTTCTTGGTGGTCTTCAC
GCATTTAACGAGTTCAATGCAGGGAATTTGGATGAGCTGATTATATTGAAGAGCATTGCAAGGAACCATATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis