Browse Element(s) Details


Os.22838.2.S1_at

Description gb:AK101381.1
DB_XREF= gi:32986590
TID=Os.22838.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0062P14.20 (OSJNBb0062P14.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036E16, full insert sequence.
FL= gb:AK101381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2697411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein
LOC_Os07g27000OsAffx.22355.1.S1_at11/117+15625101..15629991retrotransposon protein, putative, unclassified
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22838.2.S1_at--466--10431Chr07:15617393..15617417 (25 bp)
TTAGCTATCCTTGCTGGATCAAACT
LOC_Os07g26974
Os.22838.2.S1_at--957--10531Chr07:15617359..15617383 (25 bp)
TTCATGTTTGGCATTTGTCCTGCTC
LOC_Os07g26974
Os.22838.2.S1_at--271--10871Chr07:15617352..15617376 (25 bp)
TTGGCATTTGTCCTGCTCTGAAATC
LOC_Os07g26974
Os.22838.2.S1_at--1083--10811Chr07:15617345..15617369 (25 bp)
TTGTCCTGCTCTGAAATCCAGCATT
LOC_Os07g26974
Os.22838.2.S1_at--756--3031Chr07:15617331..15617355 (25 bp)
AATCCAGCATTAGCTGCTCTTGCTA
LOC_Os07g26974
Os.22838.2.S1_at--533--4952Chr11:19105619..19105638 (20 bp)
GCATTAGCTGCTCTTGCTACATCAA
NONE
Os.22838.2.S1_at--386--4771Chr07:15617319..15617343 (25 bp)
GCTGCTCTTGCTACATCAAAACTGA
LOC_Os07g26974
Os.22838.2.S1_at--1106--6531Chr07:15617289..15617313 (25 bp)
GATTTATGTTGGCATGTCTCCTGCT
LOC_Os07g26974
Os.22838.2.S1_at--207--8831Chr07:15617283..15617307 (25 bp)
TGTTGGCATGTCTCCTGCTCTGAAA
LOC_Os07g26974
Os.22838.2.S1_at--92--4291Chr07:15617270..15617294 (25 bp)
CCTGCTCTGAAACTCTTCTTGGATG
LOC_Os07g26974
Os.22838.2.S1_at--337--9571Chr07:15617257..15617281 (25 bp)
TCTTCTTGGATGGATGATGCAGGCG
LOC_Os07g26974
Target Sequence 
TTAGCTATCCTTGCTGGATCAAACTGATAATAGATTCATGTTTGGCATTTGTCCTGCTCTGAAATCCAGCATTAGCTGCT
CTTGCTACATCAAAACTGACAAAAGATTTATGTTGGCATGTCTCCTGCTCTGAAACTCTTCTTGGATGGATGATGCAGGC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22838.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis