Browse Element(s) Details


Os.22838.3.S1_x_at

Description gb:NM_187147.1
DB_XREF= gi:34901379
GEN=OSJNBb0062P14.20
TID=Os.22838.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0062P14.20 (OSJNBb0062P14.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0062P14.20 (OSJNBb0062P14.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2697411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26920NANA7+15594065..155952743'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26930Os.5180.1.S1_at8/117+15596320..155989153'-5' exonuclease domain-containing protein, putative, expressed
LOC_Os07g26940Os.56132.1.S1_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.47132.1.A1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26940Os.9465.1.S1_s_at11/117+15600331..15602884ORMDL family protein, expressed
LOC_Os07g26950OsAffx.28612.1.S1_at9/117+15607946..15609721hypothetical protein
LOC_Os07g26950OsAffx.27754.1.S1_at1/117+15607946..15609721hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26960OsAffx.16431.1.S1_x_at11/117+15612888..15614643hypothetical protein
LOC_Os07g26974Os.22838.2.S1_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.3.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974Os.22838.1.S1_x_at11/117+15616636..15620244expressed protein
LOC_Os07g26974OsAffx.28613.1.S1_at1/117+15616636..15620244expressed protein
LOC_Os07g26990OsAffx.16432.1.S1_at10/117+15622895..15624094hypothetical protein
LOC_Os07g27000OsAffx.22355.1.S1_at11/117+15625101..15629991retrotransposon protein, putative, unclassified
LOC_Os07g27010OsAffx.10118.1.S1_at11/117+15643088..15646302retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22838.3.S1_x_at--941--1051Chr07:15620149..15620173 (25 bp)
AGGTGGACAAGAAGGTGCAGCTCAT
LOC_Os07g26974
Os.22838.3.S1_x_at--1160--2871Chr07:15620141..15620162 (22 bp)
AAGGTGCAGCTCATGAAAGAGGAAA
LOC_Os07g26974
Os.22838.3.S1_x_at--100--331Chr07:15619523..15619547 (25 bp)
ATACTGTAACACTTATTCTGTGTAG
LOC_Os07g26974
Os.22838.3.S1_x_at--78--10611Chr07:15619508..15619532 (25 bp)
TTCTGTGTAGATTCAGACCATCCTG
LOC_Os07g26974
Os.22838.3.S1_x_at--451--6951Chr07:15619502..15619526 (25 bp)
GTAGATTCAGACCATCCTGTACCAG
LOC_Os07g26974
Os.22838.3.S1_x_at--165--1391Chr07:15619494..15619518 (25 bp)
AGACCATCCTGTACCAGTGCTATAT
LOC_Os07g26974
Os.22838.3.S1_x_at--82--571Chr07:15619489..15619513 (25 bp)
ATCCTGTACCAGTGCTATATCAAGT
LOC_Os07g26974
Os.22838.3.S1_x_at--1016--6971Chr07:15619484..15619508 (25 bp)
GTACCAGTGCTATATCAAGTTCATA
LOC_Os07g26974
Os.22838.3.S1_x_at--73--231Chr07:15619457..15619481 (25 bp)
ATATATGCATAGCAAAGAGCTCATC
LOC_Os07g26974
Os.22838.3.S1_x_at--759--2331Chr07:15619444..15619468 (25 bp)
AAAGAGCTCATCATCTTCCGTTTTG
LOC_Os07g26974
Os.22838.3.S1_x_at--81--5911Chr07:15619441..15619465 (25 bp)
GAGCTCATCATCTTCCGTTTTGAAG
LOC_Os07g26974
Target Sequence 
AGGTGGACAAGAAGGTGCAGCTCATGAAAGAGGAAAATAATAATAGGAAAAATAATACTGTAACACTTATTCTGTGTAGA
TTCAGACCATCCTGTACCAGTGCTATATCAAGTTCATATTATATATGCATAGCAAAGAGCTCATCATCTTCCGTTTTGAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22838.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis