Browse Element(s) Details


Os.22857.1.A1_at

Description gb:BX928522
DB_XREF= gi:41883630
DB_XREF=BX928522
CLONE=y718d02p3
TID=Os.22857.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042P21.26 (OSJNBa0042P21.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g368209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36790Os.24917.1.S1_at11/111+20791475..20796096Protein kinase domain containing protein, expressed
LOC_Os01g36800Os.19099.1.S1_x_at2/111+20799656..20801712retrotransposon, putative, centromere-specific
LOC_Os01g36810OsAffx.23532.1.S1_at11/111+20804828..20805472hypothetical protein
LOC_Os01g36820Os.22857.1.A1_at9/111+20806847..20809629expressed protein
LOC_Os01g36820Os.8753.4.S1_x_at2/111+20806847..20809629expressed protein
LOC_Os01g36830OsAffx.23533.1.S1_x_at11/111+20813209..20815482Polygalacturonase family protein, expressed
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22857.1.A1_at--84--2871Chr01:20808021..20808045 (25 bp)
AAGTGCATATCCATTCTCAACTCGA
LOC_Os01g36820
Os.22857.1.A1_at--1111--3731Chr01:20808006..20808030 (25 bp)
CTCAACTCGATGGTGGTAGTGACAA
LOC_Os01g36820
Os.22857.1.A1_at--158--6051Chr01:20807931..20807955 (25 bp)
GAGATTTTTGTGAGCACTTGTCAAG
LOC_Os01g36820
Os.22857.1.A1_at--751--5351Chr01:20807907..20807931 (25 bp)
GAAGATGCCGAATCTGCCTTGATTT
LOC_Os01g36820
Os.22857.1.A1_at--485--5371Chr01:20807121..20807145 (25 bp)
GAAGACACTGGCTTATAGCTTATGA
LOC_Os01g36820
Os.22857.1.A1_at--803--9511Chr01:20807052..20807076 (25 bp)
TCTCTGCTCATTGACTTTCTGGAGT
LOC_Os01g36820
Os.22857.1.A1_at--515--7331Chr01:20807008..20807032 (25 bp)
GTGCATGTCTTTTTATCTTGCGTAG
LOC_Os01g36820
Os.22857.1.A1_at--585--9571Chr01:20806993..20807017 (25 bp)
TCTTGCGTAGTTGTGCAGGGTGACT
LOC_Os01g36820
Os.22857.1.A1_at--235--451Chr01:20806947..20806971 (25 bp)
ATCTCTGAATCCTAGAAGTCGGGTA
LOC_Os01g36820
Os.22857.1.A1_at--906--5611Chr01:20806832..20806856 (25 bp)
GACAACTCGATGCTGGACGTATCCT
NONE
Os.22857.1.A1_at--1019--4711Chr01:20806821..20806845 (25 bp)
GCTGGACGTATCCTCTGTATATCGT
NONE
Target Sequence 
AAGTGCATATCCATTCTCAACTCGATGGTGGTAGTGACAAAACANAGAGAAGGCCAAAGCTTATACCGTCTTCAAGAATG
CAGAGAATAGAGAGATTTTTGTGAGCACTTGTCAAGAAGATGCCGAATCTGCCTTGATTTGGTTAAGAAGTGAGATGGCT
TGATAGGTATCAGAAGACACTGGCTTATAGCTTATGATCATGCTTCGATAGAAATGACTCAAAATGCTCACCCTCTGCAG
CTCTCTGCTCATTGACTTTCTGGAGTTACTATTGTTGTAGCTTTTGTGCATGTCTTTTTATCTTGCGTAGTTGTGCAGGG
TGACTAAAATCATCATTGATAGCTTCATCTCTGAATCCTAGAAGTCGGGTACATGGTACTTCATAAGTTGCAAACTTGCA
ATAGGATCATATGATTAATTTCTGAGAACTGTATACATGTTTATATTATCTATAGTTGGANGACAACTCGATGCTGGACG
TATCCTCTGTATATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22857.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis