Browse Element(s) Details


OsAffx.23533.1.S1_x_at

Description gb:NM_193378.1
DB_XREF= gi:34913839
GEN=OSJNBa0042P21.27
TID=OsAffx.23533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polygalacturonase (OSJNBa0042P21.27), mRNA.
PROD=putative polygalacturonase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3683011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36790Os.24917.1.S1_at11/111+20791475..20796096Protein kinase domain containing protein, expressed
LOC_Os01g36800Os.19099.1.S1_x_at2/111+20799656..20801712retrotransposon, putative, centromere-specific
LOC_Os01g36810OsAffx.23532.1.S1_at11/111+20804828..20805472hypothetical protein
LOC_Os01g36820Os.22857.1.A1_at9/111+20806847..20809629expressed protein
LOC_Os01g36820Os.8753.4.S1_x_at2/111+20806847..20809629expressed protein
LOC_Os01g36830OsAffx.23533.1.S1_x_at11/111+20813209..20815482Polygalacturonase family protein, expressed
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23533.1.S1_x_at--942--5751Chr01:20814711..20814735 (25 bp)
GACGGGATGCTCCAATGTTCACATG
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--906--5371Chr01:20814735..20814759 (25 bp)
GAAGAACATCAACTGCAATCCCGGA
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--349--5191Chr01:20814749..20814770 (22 bp)
GCAATCCCGGACATGGAATCAGCTT
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--184--351Chr01:20814885..20814909 (25 bp)
ATAACAGCTTGGCTTGCGTCTCTGA
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--452--4651Chr01:20814900..20814924 (25 bp)
GCGTCTCTGATGTGTTCGCCGAGCA
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--581--5111Chr01:20814922..20814946 (25 bp)
GCACATCAACGTGGAGAACGCCTTG
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--1039--1811Chr01:20814939..20814963 (25 bp)
ACGCCTTGTATGGTGTCAGGATCAA
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--128--8231Chr01:20815075..20815099 (25 bp)
GGCACGGTGAGGAACGTCACCTTCT
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--1092--1731Chr01:20815093..20815117 (25 bp)
ACCTTCTCCAACGTGAGGGTGGCGA
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--485--7631Chr01:20815237..20815261 (25 bp)
GGGACGTACACGTACCAGCCGGTGC
LOC_Os01g36830
OsAffx.23533.1.S1_x_at--773--1671Chr01:20815358..20815382 (25 bp)
AGCCGCTCTGCTGGAAGTCGTACGG
LOC_Os01g36830
Target Sequence 
GACGGGATGCTCCAATGTTCACATGAAGAACATCAACTGCAATCCCGGACATGGAATCAGCTTAGGGGGATTAGGGAAGG
ATAACAGCTTGGCTTGCGTCTCTGATGTGTTCGCCGAGCACATCAACGTGGAGAACGCCTTGTATGGTGTCAGGATCAAG
ACATGGCAGGGAGGCAAAGGCACGGTGAGGAACGTCACCTTCTCCAACGTGAGGGTGGCGAACGTGGCGACGCCGATCGC
CATCGACCAGTTCTACTGCGACGCCGGCGGCGGCGGCGCGCGGTGCGGGAACAGGAGCGACGCCGTGGGGATCACCGGCG
TGGCGTACCGGCGCGTCGCGGGGACGTACACGTACCAGCCGGTGCGCCTGGCGTGCAGCGACGCCCGGCCGTGCACCGGC
GTCAGCATGGCCGACGTCCGCCTGTCGCCGGCGAGCGCCACCGGCGCCGGCGGACTGCGGCAGCCGCTCTGCTGGAAGTC
GTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23533.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis