Browse Element(s) Details


OsAffx.23532.1.S1_at

Description tigr:9629.m03476
TID=OsAffx.23532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36790Os.24917.1.S1_at11/111+20791475..20796096Protein kinase domain containing protein, expressed
LOC_Os01g36800Os.19099.1.S1_x_at2/111+20799656..20801712retrotransposon, putative, centromere-specific
LOC_Os01g36810OsAffx.23532.1.S1_at11/111+20804828..20805472hypothetical protein
LOC_Os01g36820Os.22857.1.A1_at9/111+20806847..20809629expressed protein
LOC_Os01g36820Os.8753.4.S1_x_at2/111+20806847..20809629expressed protein
LOC_Os01g36830OsAffx.23533.1.S1_x_at11/111+20813209..20815482Polygalacturonase family protein, expressed
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23532.1.S1_at--131--3491Chr01:20804881..20804905 (25 bp)
CAGGCATGGCGCTGAGACGGAAGGC
LOC_Os01g36810
OsAffx.23532.1.S1_at--1114--1611Chr01:20804951..20804975 (25 bp)
AGCGGCGAACACTTAGTGGTGTCAG
LOC_Os01g36810
OsAffx.23532.1.S1_at--289--3291Chr01:20804960..20804984 (25 bp)
CACTTAGTGGTGTCAGGATCCTCCT
LOC_Os01g36810
OsAffx.23532.1.S1_at--39--10451Chr01:20804963..20804987 (25 bp)
TTAGTGGTGTCAGGATCCTCCTTCC
LOC_Os01g36810
OsAffx.23532.1.S1_at--499--1571Chr01:20805009..20805033 (25 bp)
AGCTCGGACACGCTAGGCCGACATG
LOC_Os01g36810
OsAffx.23532.1.S1_at--1002--4851Chr01:20805020..20805044 (25 bp)
GCTAGGCCGACATGGCCGCTGTTGC
LOC_Os01g36810
OsAffx.23532.1.S1_at--608--10871Chr01:20805070..20805094 (25 bp)
TTGGCCCCTACAAGCGGCGTCGGGA
LOC_Os01g36810
OsAffx.23532.1.S1_at--471--991Chr01:20805136..20805160 (25 bp)
AGGAGGAGGCCATTCTTGCTCGCCA
LOC_Os01g36810
OsAffx.23532.1.S1_at--75--9311Chr01:20805341..20805365 (25 bp)
TCCGCCTTCATTATCGGCTGCACGA
LOC_Os01g36810
OsAffx.23532.1.S1_at--560--10551Chr01:20805347..20805371 (25 bp)
TTCATTATCGGCTGCACGAGCGACC
LOC_Os01g36810
OsAffx.23532.1.S1_at--497--10431Chr01:20805351..20805375 (25 bp)
TTATCGGCTGCACGAGCGACCTCCT
LOC_Os01g36810
Target Sequence 
CAGGCATGGCGCTGAGACGGAAGGCGCAAGAGGGCAGGCGGTGGACGGCAGCGTGGCACGTGGAGGCGGGAGCGGCGAAC
ACTTAGTGGTGTCAGGATCCTCCTTCCCCACCGTCGCGGCGCGCACGGAGCTCGGACACGCTAGGCCGACATGGCCGCTG
TTGCGGCCGCCGTCTTCCTCCCGCTGGACTTGGCCCCTACAAGCGGCGTCGGGAGGAGGTGGAAAAGAGACGGAAGAGGG
AGGAGGCTGCGGCGGAGGAGGAGGCCATTCTTGCTCGCCACCGACCCCCGCTGACATGTTCCCCCTCCTCGTCTCATGCC
GCCGCCCACCCCTCCGAGTCACCTCCACCGCTGCAGTCCTCGCGCTGCTCGCCATCGCAACCACATTCCTCCTCACAAGC
CACGCGCGCCGATCGTCGGCCCACCCCCGTGCGCAGCTGCCCACCTTCGCCTTCGCTGCCTCCGCCTTCATTATCGGCTG
CACGAGCGACCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis