Browse Element(s) Details


Os.2293.1.S1_at

Description gb:AK070258.1
DB_XREF= gi:32980282
TID=Os.2293.1
CNT=78
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2293 (NCBI UniGene Cluster)
UG_TITLE=Clone FIL2 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044A02, full insert sequence.
FL= gb:AK070258.1 gb:AK070479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4471010/11YABBY protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44690OsAffx.3513.1.S1_at11/113+25140987..25141953hypothetical protein
LOC_Os03g44710Os.2293.1.S1_at10/113+25151258..25161157YABBY protein, putative, expressed
LOC_Os03g44710Os.17034.1.S1_at1/113+25151258..25161157YABBY protein, putative, expressed
LOC_Os03g44720OsAffx.25542.1.S1_at11/113+25166319..25167143hypothetical protein
LOC_Os03g44740NANA3+25174114..25175727Cytochrome P450 family protein, expressed
LOC_Os03g44750NANA3+25181782..25182444expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0010254biological_processnectary development
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048440biological_processcarpel development
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2293.1.S1_at--1009--1351NONE
AGAGCATATGCTGCACGTGCGACCT
NONE
Os.2293.1.S1_at--717--4651Chr03:25159910..25159934 (25 bp)
GCGGGTTCCTTCAGCTTATAACAGA
LOC_Os03g44710
Os.2293.1.S1_at--574--5971Chr03:25160147..25160171 (25 bp)
GAGAAGCCTTCAGTACTGCAGCAAA
LOC_Os03g44710
Os.2293.1.S1_at--571--1431Chr03:25160738..25160757 (20 bp)
AGAATTGGGCGCATTTCCCGAACAT
LOC_Os03g44710
Os.2293.1.S1_at--183--3591Chr03:25160759..25160783 (25 bp)
CATTTCGGGTTAGGCTCCCATGAGA
LOC_Os03g44710
Os.2293.1.S1_at--84--6311Chr03:25160798..25160822 (25 bp)
GATGAGGCCATTGGAGCTCCTAGTC
LOC_Os03g44710
Os.2293.1.S1_at--25--10011Chr03:25160818..25160842 (25 bp)
TAGTCCCCAAAAGGTTCAAAGGCTG
LOC_Os03g44710
Os.2293.1.S1_at--94--9391Chr03:25160866..25160890 (25 bp)
TCGATGGATCCTACGTGCTTGTTGA
LOC_Os03g44710
Os.2293.1.S1_at--146--7391Chr03:25160999..25161023 (25 bp)
GTGAGTGATCGTATGCATGCAGTGC
LOC_Os03g44710
Os.2293.1.S1_at--1119--9871Chr03:25161057..25161081 (25 bp)
TACATGCAGCTAGTGTCGACGCACG
LOC_Os03g44710
Os.2293.1.S1_at--570--9371Chr03:25161072..25161096 (25 bp)
TCGACGCACGTATGACAGACTGAAT
LOC_Os03g44710
Target Sequence 
AGAGCATATGCTGCACGTGCGACCTCCAGAGAAGAGGCAGCGGGTTCCTTCAGCTTATAACAGATTTATCAAGGAAGAGA
TCCGGAGGATAAAAGCAAACAATCCTGACATAAGCCACAGAGAAGCCTTCAGTACTGCAGCAAAGAATTGGGCGCATTTC
CCGAACATCCATTTCGGGTTAGGCTCCCATGAGAGCAGCAAGAAGCTCGATGAGGCCATTGGAGCTCCTAGTCCCCAAAA
GGTTCAAAGGCTGTATTGATCGAGTACACATGATGATCGATGGATCCTACGTGCTTGTTGATCTCATGTTGTAAGTAACT
TAAAAAAAAAAAAAAGTCTACGCTTATTTATTTCTTAAGTATCATCAGTTAAATTTGTGAGCGAGTATATAGATGAGTTG
TCATGATCAGTGAGTGATCGTATGCATGCAGTGCTGAGAATTAAAGGTGTATATGCATGAGTAACGTTACATGCAGCTAG
TGTCGACGCACGTATGACAGACTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis