Browse Element(s) Details


OsAffx.25542.1.S1_at

Description tigr:9631.m04323
TID=OsAffx.25542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4472011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44690OsAffx.3513.1.S1_at11/113+25140987..25141953hypothetical protein
LOC_Os03g44710Os.2293.1.S1_at10/113+25151258..25161157YABBY protein, putative, expressed
LOC_Os03g44710Os.17034.1.S1_at1/113+25151258..25161157YABBY protein, putative, expressed
LOC_Os03g44720OsAffx.25542.1.S1_at11/113+25166319..25167143hypothetical protein
LOC_Os03g44740NANA3+25174114..25175727Cytochrome P450 family protein, expressed
LOC_Os03g44750NANA3+25181782..25182444expressed protein
LOC_Os03g44760Os.49442.2.S1_x_at11/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44760OsAffx.16734.1.S1_at1/113+25188247..25194395meiosis protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25542.1.S1_at--620--4611Chr03:25166698..25166722 (25 bp)
GCGACCTCACGCGAGTCGAGCAGGA
LOC_Os03g44720
OsAffx.25542.1.S1_at--1139--4611Chr03:25166708..25166732 (25 bp)
GCGAGTCGAGCAGGACTGCCGAAAC
LOC_Os03g44720
OsAffx.25542.1.S1_at--952--931Chr03:25166719..25166743 (25 bp)
AGGACTGCCGAAACGCCCAAGCCTA
LOC_Os03g44720
OsAffx.25542.1.S1_at--664--551Chr03:25166771..25166795 (25 bp)
ATCCGTCCGTGTCGCCGTGCATGAC
LOC_Os03g44720
OsAffx.25542.1.S1_at--622--9051Chr03:25166788..25166812 (25 bp)
TGCATGACGCCCTCTTCGTGCGTGA
LOC_Os03g44720
OsAffx.25542.1.S1_at--1058--4591Chr03:25166851..25166875 (25 bp)
GCGACTACTTTGAGCGGCCCCTGGA
LOC_Os03g44720
OsAffx.25542.1.S1_at--55--9091Chr03:25166899..25166923 (25 bp)
TGCTCTTCCGCGTGTTGGCGCGGTC
LOC_Os03g44720
OsAffx.25542.1.S1_at--608--2311Chr03:25167024..25167048 (25 bp)
AAAGGTTTGAGATCGCTTGGAAGTG
LOC_Os03g44720
OsAffx.25542.1.S1_at--418--2653Chr03:25167061..25167085 (25 bp)
AACCACTTTGCGGAGTGGCATTACA
LOC_Os03g44720
OsAffx.25542.1.S1_at--1023--6118Chr12:16631077..16631100 (24 bp)
GAGTGGCATTACAGCGAAACCCACG
NONE
OsAffx.25542.1.S1_at--117--5551Chr03:25167088..25167112 (25 bp)
GAAACCCACGATTCAAAGTGGCACA
LOC_Os03g44720
Target Sequence 
GCGACCTCACGCGAGTCGAGCAGGACTGCCGAAACGCCCAAGCCTACCACGCCTACCACGCCCGAGCCGCCGCATCCGTC
CGTGTCGCCGTGCATGACGCCCTCTTCGTGCGTGACCTCGCCGCCATCCCAGAGGATAGGTGGGCCCACGACGGCGACTA
CTTTGAGCGGCCCCTGGACGACGCCCGTGGAGGAGGCGGTGTGCTCTTCCGCGTGTTGGCGCGGTCGGCGGTGGCCGGCG
GGAGGGTGAAGGGACCAAAGGGTATTTTGGTCAGCCGGGGTGCAAAAAATGGTGGAAATGGTGTGAATTGGAGATTATGG
CAAAAGAAAGGTTTGAGATCGCTTGGAAGTGGCATTTTAACGAAACCACTTTGCGGAGTGGCATTACAGCGAAACCCACG
ATTCAAAGTGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis