Browse Element(s) Details


Os.49442.2.S1_x_at

Description gb:AK101644.1
DB_XREF= gi:32986853
TID=Os.49442.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055N07, full insert sequence.
FL= gb:AK101644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4476011/11meiosis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44720OsAffx.25542.1.S1_at11/113+25166319..25167143hypothetical protein
LOC_Os03g44740NANA3+25174114..25175727Cytochrome P450 family protein, expressed
LOC_Os03g44750NANA3+25181782..25182444expressed protein
LOC_Os03g44760Os.49442.2.S1_x_at11/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44760OsAffx.16734.1.S1_at1/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44780Os.54150.1.S1_at11/113+25205168..25208480elongation factor Tu family protein, putative, expressed
LOC_Os03g44800OsAffx.13351.1.S1_at11/113+25218463..25222121expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007065biological_processmale meiosis sister chromatid cohesion
GO:0007066biological_processfemale meiosis sister chromatid cohesion
GO:0007131biological_processmeiotic recombination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49442.2.S1_x_at--288--9671Chr03:25193559..25193583 (25 bp)
TCACTGTCCCGGCATTACACAACTT
LOC_Os03g44760
Os.49442.2.S1_x_at--599--811Chr03:25193868..25193892 (25 bp)
ATGGTGACCCTGTTCGATGGAGACT
LOC_Os03g44760
Os.49442.2.S1_x_at--112--7271Chr03:25193939..25193963 (25 bp)
GTCCTACTGCTGATCAAGTTCTTCC
LOC_Os03g44760
Os.49442.2.S1_x_at--863--6251Chr03:25194168..25194192 (25 bp)
GATGTTTCAGGCTGGTTGGTCAGTT
LOC_Os03g44760
Os.49442.2.S1_x_at--130--7111Chr03:25194186..25194210 (25 bp)
GTCAGTTAATGGTTTGAGTCCCCAT
LOC_Os03g44760
Os.49442.2.S1_x_at--216--6111Chr03:25194201..25194225 (25 bp)
GAGTCCCCATGTCTGTACTGATCGA
LOC_Os03g44760
Os.49442.2.S1_x_at--243--7011Chr03:25194215..25194239 (25 bp)
GTACTGATCGATGTAAGCCTGACAA
LOC_Os03g44760
Os.49442.2.S1_x_at--719--3111Chr03:25194239..25194263 (25 bp)
AATTTTGGTAGGCTGATACTCTCCC
LOC_Os03g44760
Os.49442.2.S1_x_at--462--9971Chr03:25194264..25194288 (25 bp)
TAGCCCTTCGCGTGACACATTCGAA
LOC_Os03g44760
Os.49442.2.S1_x_at--377--791Chr03:25194294..25194318 (25 bp)
ATGTGTCCAGTTTTCTGACGGGCTA
LOC_Os03g44760
Os.49442.2.S1_x_at--367--10091Chr03:25194317..25194341 (25 bp)
TAGGTCCGCTATTTTGTCCTGGATA
LOC_Os03g44760
Target Sequence 
TCACTGTCCCGGCATTACACAACTTCTCCGGCCTCACCTTACGCCATGTGGACTCCTCGTCGCGGTCGTCCGCGCCATGC
GGTGCTAGGGAGAAGATGGTGACCCTGTTCGATGGAGACTGCGGGGGGATCAGCGTCGTGGGCACCGAGCTGGCACTGGC
CACTCCGTCCTACTGCTGATCAAGTTCTTCCCTCCCCTTCTGCTTCGCCACCCGCCCCCATAATTAATTAATTAATCACG
GAACCAAAAGATTTATTCTAGTTTAAGGTAGAGAAATGATAACATAAGAAGACAATAACAACACACACACACACACACAA
AAATATAAGATAGAAGAGGAAGAGTTATTTTTCTCGGTTACAAACTCAAAGTTGCAGTTTAGAACTTGGTAAGTAGATGT
TTCAGGCTGGTTGGTCAGTTAATGGTTTGAGTCCCCATGTCTGTACTGATCGATGTAAGCCTGACAAATTTTGGTAGGCT
GATACTCTCCCTAGCCCTTCGCGTGACACATTCGAAGTGGAATGTGTCCAGTTTTCTGACGGGCTAGGTCCGCTATTTTG
TCCTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49442.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis