Browse Element(s) Details


Os.23180.1.S1_at

Description gb:CB000612
DB_XREF= gi:27577917
DB_XREF=S345Q_H09
TID=Os.23180.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23180 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5749011/11beta-Ig-H3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57470NANA3+32702094..32705234retrotransposon protein, putative, unclassified
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed
LOC_Os03g57510OsAffx.13524.1.S1_at11/113+32730579..32733924Calcium-dependent protein kinase, isoform AK1, putative
LOC_Os03g57520OsAffx.13525.1.S1_x_at11/113+32736937..32737440VQ motif family protein, expressed
LOC_Os03g57530Os.8416.1.S1_at10/113+32739529..32741924expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007155biological_processcell adhesion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23180.1.S1_at--316--3611Chr03:32718381..32718405 (25 bp)
CTTGGCGAGCGCATTATACAGCAGT
LOC_Os03g57490
Os.23180.1.S1_at--993--10171Chr03:32718367..32718391 (25 bp)
TATACAGCAGTTGGCCGCTTGCGCA
LOC_Os03g57490
Os.23180.1.S1_at--7--171Chr03:32718343..32718367 (25 bp)
ATTATCTCTTCTACCATGCTGAACT
LOC_Os03g57490
Os.23180.1.S1_at--325--3351Chr03:32718315..32718339 (25 bp)
CACCCTCAATTTCCCATCATGGTAG
LOC_Os03g57490
Os.23180.1.S1_at--499--6231Chr03:32718286..32718310 (25 bp)
GATGGCCATTGTAGGCTCACAGCTA
LOC_Os03g57490
Os.23180.1.S1_at--733--9951Chr03:32718263..32718287 (25 bp)
TACCGATCCATCTCTACGTGGTGAA
LOC_Os03g57490
Os.23180.1.S1_at--236--5531Chr03:32717502..32717526 (25 bp)
GAAAAGCCGCTTGTTCGGAGCACCT
LOC_Os03g57490
Os.23180.1.S1_at--867--3951Chr03:32717487..32717511 (25 bp)
CGGAGCACCTGAGATATCCAGCGAT
LOC_Os03g57490
Os.23180.1.S1_at--493--4451Chr03:32717455..32717479 (25 bp)
GCCTTCATCATCTTTGTGTGCTTCA
LOC_Os03g57490
Os.23180.1.S1_at--1130--2311Chr03:32717430..32717454 (25 bp)
AAAGTCGTTGGAAGCTCTTGCGTTC
LOC_Os03g57490
Os.23180.1.S1_at--744--9571Chr03:32717415..32717439 (25 bp)
TCTTGCGTTCAGATCACGGGACGTT
LOC_Os03g57490
Target Sequence 
CTTGGCGAGCGCATTATACAGCAGTTGGCCGCTTGCGCATTATCTCTTCTACCATGCTGAACTTCGCACCCTCAATTTCC
CATCATGGTAGAAGAGATGGCCATTGTAGGCTCACAGCTACCGATCCATCTCTACGTGGTGAATTGGTGATAGAGCAATG
AACATGAACAGGTCCAGAGAGAAAAGCCGCTTGTTCGGAGCACCTGAGATATCCAGCGATGCTTCATGCCTTCATCATCT
TTGTGTGCTTCAAAAGTCGTTGGAAGCTCTTGCGTTCAGATCACGGGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis