Browse Element(s) Details


Os.23339.1.A1_at

Description gb:AK064659.1
DB_XREF= gi:32974677
TID=Os.23339.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H04, full insert sequence.
FL= gb:AK064659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g136308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13610Os.45212.1.S1_x_at1/1110+7142481..7148038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13620NANA10+7148334..7148849hypothetical protein
LOC_Os10g13630Os.23339.1.A1_at8/1110+7150938..7160271expressed protein
LOC_Os10g13630Os.41248.2.A1_at2/1110+7150938..7160271expressed protein
LOC_Os10g13650OsAffx.20607.1.S1_at11/1110+7173929..7176395hypothetical protein
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23339.1.A1_at--355--3411Chr10:7159538..7159562 (25 bp)
CAGAAGGTTCGCAAAGATGTGTTAA
LOC_Os10g13630
Os.23339.1.A1_at--770--9591Chr10:7159953..7159977 (25 bp)
TCATCAGAAGCGAGGTGAGCTGCGT
LOC_Os10g13630
Os.23339.1.A1_at--918--8911Chr10:7159968..7159992 (25 bp)
TGAGCTGCGTTTGCTAACAGTTGCA
LOC_Os10g13630
Os.23339.1.A1_at--504--5331Chr10:7159998..7160022 (25 bp)
GAAGTGCTTCCTTAGTGCAAGAAAA
LOC_Os10g13630
Os.23339.1.A1_at--646--631Chr10:7160047..7160071 (25 bp)
ATGCTTATCAAAAGAGTCGCTGAGC
LOC_Os10g13630
Os.23339.1.A1_at--684--7231Chr10:7160062..7160086 (25 bp)
GTCGCTGAGCTCATTGGTTAACATA
LOC_Os10g13630
Os.23339.1.A1_at--52--3591Chr10:7160167..7160191 (25 bp)
CATTTTAAAATGAGTTCCTGCTGAC
LOC_Os10g13630
Os.23339.1.A1_at--173--6071Chr10:7160178..7160202 (25 bp)
GAGTTCCTGCTGACATAAATCTTGG
LOC_Os10g13630
Os.23339.1.A1_at--263--8551NONE
TGGAGCAGTACGTGAGAGCCCCTAT
NONE
Os.23339.1.A1_at--604--5871NONE
GAGCCCCTATAAAATGTCCCATGTC
NONE
Os.23339.1.A1_at--1039--751NONE
ATGTCCCATGTCAAGGTATAGATAG
NONE
Target Sequence 
CAGAAGGTTCGCAAAGATGTGTTAACTGCAGTANCAAAACCANCAATAAGANCAGAAGATGTCAAAGACCNCTTCACTAA
AAAGGTGGTAGATAATCAGAAGGATGAGCTAATGAAAAAGGCANCAAAGGCAAAAGGAAGGAGAGTAGTTANCAGCNCTG
AGTTAACTTCAATGAACTCAAAAACAAACTNTGATGTACTCAATGATGACATAGTTAGAAAGGTGACAGATCATCAGAAG
CGAGGTGAGCTGCGTTTGCTAACAGTTGCAGATNTGAAGTGCTTCCTTAGTGCAAGAAAAGTGAAGGTTGGAGGGACAAA
GGAAATGCTTATCAAAAGAGTCGCTGAGCTCATTGGTTAACATATAGGTACAAGTTTNTAACATGTGCAGTNTGCAAAGC
NCAAGTAGACTTGTGAAGAGAATTCGGTTATCATTTTTCTTTCTCATTTTAAAATGAGTTCCTGCTGACATAAATCTTGG
GAAACATGGAGCAGTACGTGAGAGCCCCTATAAAATGTCCCATGTCAAGGTATAGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23339.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis