Browse Element(s) Details


Os.8029.1.S1_at

Description gb:AK120883.1
DB_XREF= gi:37990506
TID=Os.8029.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydroxyproline-rich glycoprotein (OSJNBa0004P12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028G02, full insert sequence.
FL= gb:AK120883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1367011/11RING zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13630Os.23339.1.A1_at8/1110+7150938..7160271expressed protein
LOC_Os10g13630Os.41248.2.A1_at2/1110+7150938..7160271expressed protein
LOC_Os10g13650OsAffx.20607.1.S1_at11/1110+7173929..7176395hypothetical protein
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed
LOC_Os10g13680OsAffx.8359.1.S1_at11/1110+7188762..7190948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.1.S1_at11/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.3.S1_x_at4/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690Os.52249.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.22180.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13700Os.8805.1.S1_at11/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13700Os.24219.1.A1_at1/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8029.1.S1_at--376--5011Chr10:7180410..7180434 (25 bp)
GCAGGCAACCTGTGGAGCGTTTGCT
LOC_Os10g13670
Os.8029.1.S1_at--789--2671Chr10:7180281..7180305 (25 bp)
AAGCGTGATCGCATTTGAACTTCAT
LOC_Os10g13670
Os.8029.1.S1_at--92--2031Chr10:7180243..7180267 (25 bp)
ACTACTTGATGTCTGGTTTGCTGCC
LOC_Os10g13670
Os.8029.1.S1_at--1078--10171Chr10:7180212..7180236 (25 bp)
TATACAGGAGCTCCCCTTGAATAAG
LOC_Os10g13670
Os.8029.1.S1_at--392--4571Chr10:7180130..7180154 (25 bp)
GCGCGCGGTGGCTTGCAAACTTGCA
LOC_Os10g13670
Os.8029.1.S1_at--653--10431Chr10:7180077..7180101 (25 bp)
TTAGTTAATACCCTGCATCCATGAA
LOC_Os10g13670
Os.8029.1.S1_at--127--9511Chr10:7180032..7180056 (25 bp)
TCTCTCTACTTGTACTACTGCGACA
LOC_Os10g13670
Os.8029.1.S1_at--390--3351Chr10:7179999..7180023 (25 bp)
CACGATTTGTATTACTGCGGCTGAT
LOC_Os10g13670
Os.8029.1.S1_at--421--3971Chr10:7179956..7179980 (25 bp)
CGGTATTGGCTATAGTTCTGTCGTT
LOC_Os10g13670
Os.8029.1.S1_at--254--10551Chr10:7179941..7179965 (25 bp)
TTCTGTCGTTAACTTGCCCTTTGAG
LOC_Os10g13670
Os.8029.1.S1_at--972--3131Chr10:7179900..7179924 (25 bp)
AATTATCTGGCAATTACTCCCATCA
LOC_Os10g13670
Target Sequence 
GCAGGCAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCCAGCAGATACCACA
ACNNCCACCACCTCCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATA
TNACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAA
GACATGTGCGTNNTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGG
GTGTGCTGNNNNNNNNNNNNNNNAGGNNNNATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAAT
TCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGT
ATTGGCTATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAATTACTCCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis