Browse Element(s) Details


OsAffx.8359.1.S1_at

Description gb:NM_195444.1
DB_XREF= gi:37532247
TID=OsAffx.8359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0004P12.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1368011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13650OsAffx.20607.1.S1_at11/1110+7173929..7176395hypothetical protein
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed
LOC_Os10g13680OsAffx.8359.1.S1_at11/1110+7188762..7190948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.1.S1_at11/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.3.S1_x_at4/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690Os.52249.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.22180.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13700Os.8805.1.S1_at11/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os10g13700Os.24219.1.A1_at1/1110+7203525..7209267Phosphoenolpyruvate carboxykinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8359.1.S1_at--1127--5191Chr10:7188800..7188824 (25 bp)
GAATTGGATGTATCGCAACTCTGCG
LOC_Os10g13680
OsAffx.8359.1.S1_at--944--9511Chr10:7188830..7188854 (25 bp)
TCTAGAGAAGCCTAAGCCGAAGCCT
LOC_Os10g13680
OsAffx.8359.1.S1_at--316--951Chr10:7189082..7189106 (25 bp)
AGGAACAGCTCAATCATCGTCTCAG
LOC_Os10g13680
OsAffx.8359.1.S1_at--350--511Chr10:7189097..7189121 (25 bp)
ATCGTCTCAGACTTGCGGCTATAGA
LOC_Os10g13680
OsAffx.8359.1.S1_at--21--6291Chr10:7190177..7190201 (25 bp)
GATGTTGTAACTGCCTATCTCTATG
LOC_Os10g13680
OsAffx.8359.1.S1_at--1021--4431Chr10:7190189..7190213 (25 bp)
GCCTATCTCTATGGGAACTTGGACA
LOC_Os10g13680
OsAffx.8359.1.S1_at--283--5491Chr10:7190215..7190419 (25 bp)
GAACATTTGCATGAAGAGATCCCAT
LOC_Os10g13680
OsAffx.8359.1.S1_at--953--6411Chr10:7190453..7190477 (25 bp)
GATCTAAACATCATCGGGACAGTCA
LOC_Os10g13680
OsAffx.8359.1.S1_at--383--7691Chr10:7190832..7190856 (25 bp)
GGGTATAGCACAGAGCCTACTAAGA
LOC_Os10g13680
OsAffx.8359.1.S1_at--46--2311Chr10:7190865..7190889 (25 bp)
AAAGGCATCAAGGACATTCTTCGTT
LOC_Os10g13680
OsAffx.8359.1.S1_at--570--8131Chr10:7190876..7190900 (25 bp)
GGACATTCTTCGTTATCTTAAAGGA
LOC_Os10g13680
Target Sequence 
GAATTGGATGTATCGCAACTCTGCGTACAATCTAGAGAAGCCTAAGCCGAAGCCTAAGGCAAAGAAAAAGAAAAGAAATG
TGGAGAAGACGGTGGAGGAAGAGGAACAGCTCAATCATCGTCTCAGACTTGCGGCTATAGAGAACACTAAGAGGAAGAGG
AATGAGGAGAGGGAGCTTAGGAAGATGGCAAGGGAGTTTGCGGAGAAGAACGAGCGTGCAAAGGAACGGGCGGGAAAGGT
GGATAGGGCACAACATGCCAAGGAGGCTGATGTTGTAACTGCCTATCTCTATGGGAACTTGGACATGAACATTTGCATGA
AGAGATCCCATGATGGATTTTACATAATATATGTATATGTCGATGATCTAAACATCATCGGGACAGTCAAGGATATTGAA
GAAGCAAACTCATATTTGCAATCTGAGTTTGAAATGAAAGTCTTAGGGTATAGCACAGAGCCTACTAAGAGACATTGTAA
AGGCATCAAGGACATTCTTCGTTATCTTAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis