CREP Browser

Description

tigr:9634.m00835
TID=OsAffx.27518.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08870	11/11	hypothetical protein
LOC_Os10g13690	4/11	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g14929	4/11	T-complex protein 1, gamma subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08840	Os.7772.1.S1_at	11/11	6	+	4427667..4431315	RNA recognition motif family protein, expressed
LOC_Os06g08840	Os.7772.2.A1_at	11/11	6	+	4427667..4431315	RNA recognition motif family protein, expressed
LOC_Os06g08840	Os.7772.2.A1_x_at	11/11	6	+	4427667..4431315	RNA recognition motif family protein, expressed
LOC_Os06g08850	Os.26452.1.A1_at	11/11	6	+	4439849..4441838	Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850	OsAffx.15320.1.S1_x_at	11/11	6	+	4439849..4441838	Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860	Os.33759.1.S1_at	11/11	6	+	4442022..4445511	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
LOC_Os06g08870	OsAffx.27518.3.S1_x_at	11/11	6	+	4448305..4448774	hypothetical protein
LOC_Os06g08880	Os.52182.1.S1_at	10/11	6	+	4458008..4462883	Receptor family ligand binding region containing protein, expressed
LOC_Os06g08890	OsAffx.4774.1.S1_at	11/11	6	+	4471701..4474022	Ligand-gated ion channel family protein, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27518.3.S1_x_at--957--813	4	Chr06:4448642..4448666 (25 bp)	GGAACTTCCGGAGTTCTTGGGCCAG	LOC_Os06g08870
OsAffx.27518.3.S1_x_at--133--459	4	Chr06:4448643..4448667 (25 bp)	GAACTTCCGGAGTTCTTGGGCCAGG	LOC_Os06g08870
OsAffx.27518.3.S1_x_at--1063--925	3	Chr06:4448648..4448672 (25 bp)	TCCGGAGTTCTTGGGCCAGGGCCCG	LOC_Os06g08870
OsAffx.27518.3.S1_x_at--460--433	15	Chr12:15357186..15357208 (23 bp)	GCCAGGGCCCGGAACCTCCTGGTGA	NONE
OsAffx.27518.3.S1_x_at--676--427	14	Chr12:15357198..15357222 (25 bp)	CCTCCTGGTGAAGAACACCGGAACT	NONE
OsAffx.27518.3.S1_x_at--341--927	13	Chr12:15357200..15357224 (25 bp)	TCCTGGTGAAGAACACCGGAACTTC	NONE
OsAffx.27518.3.S1_x_at--810--247	9	Chr10:7196048..7196068 (21 bp)	AACACCGGAACTTCCTGGCAGTGAT	LOC_Os10g13690
OsAffx.27518.3.S1_x_at--780--547	5	Chr06:4448615..4448639 (25 bp)	GAACTTCCTGGCAGTGATGAGCAGC	LOC_Os06g08870
OsAffx.27518.3.S1_x_at--1057--205	6	Chr12:15357224..15357243 (20 bp)	ACTTCCTGGCAGTGATGAGCAGCCC	NONE
OsAffx.27518.3.S1_x_at--1139--363	6	Chr12:15357224..15357244 (21 bp)	CTTCCTGGCAGTGATGAGCAGCCCG	NONE
OsAffx.27518.3.S1_x_at--345--891	19	Chr12:15357234..15357258 (25 bp)	TGAGCAGCCCGGAACTTCCGGAGTT	NONE

Target Sequence

GGAACTTCCGGAGTTCTTGGGCCAGGGCCCGGAACCTCCTGGTGAAGAACACCGGAACTTCCTGGCAGTGATGAGCAGCC
CGGAACTTCCGGAGTT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details