Browse Element(s) Details


Os.26452.1.A1_at

Description gb:AK066305.1
DB_XREF= gi:32976323
TID=Os.26452.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061G13, full insert sequence.
FL= gb:AK066305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0885011/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08850Os.26452.1.A1_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850OsAffx.15320.1.S1_x_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860Os.33759.1.S1_at11/116+4442022..4445511UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
LOC_Os06g08870OsAffx.27518.3.S1_x_at11/116+4448305..4448774hypothetical protein
LOC_Os06g08880Os.52182.1.S1_at10/116+4458008..4462883Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26452.1.A1_at--287--7371Chr06:4441355..4441379 (25 bp)
GTGAAATCACCGTTTGCGCTGCAAA
LOC_Os06g08850
Os.26452.1.A1_at--33--9491Chr06:4441384..4441408 (25 bp)
TCTGCTTGTTGTCGTTCCATGATCA
LOC_Os06g08850
Os.26452.1.A1_at--644--3491Chr06:4441401..4441425 (25 bp)
CATGATCACGCTTCAGAGTTTGGGT
LOC_Os06g08850
Os.26452.1.A1_at--69--4751Chr06:4441457..4441481 (25 bp)
GCTGAAGCTCAACTTAACACGGTGA
LOC_Os06g08850
Os.26452.1.A1_at--566--10851Chr06:4441560..4441584 (25 bp)
TTGGTGATTGTGTTGCTGTAGGCTT
LOC_Os06g08850
Os.26452.1.A1_at--979--10451Chr06:4441602..4441626 (25 bp)
TTACCCTTTGGTCATGCTGTTAATC
LOC_Os06g08850
Os.26452.1.A1_at--641--51Chr06:4441655..4441679 (25 bp)
ATTGTTGGCAACAGCTTGGGACCTC
LOC_Os06g08850
Os.26452.1.A1_at--972--10831Chr06:4441670..4441694 (25 bp)
TTGGGACCTCGTAGTAGCATATTGT
LOC_Os06g08850
Os.26452.1.A1_at--1041--6611Chr06:4441693..4441717 (25 bp)
GTTGTATTTTGACTCGCCGAGCAAA
LOC_Os06g08850
Os.26452.1.A1_at--549--5131Chr06:4441713..4441737 (25 bp)
GCAAATTCTAGCGTCTCGGCGAGTA
LOC_Os06g08850
Os.26452.1.A1_at--722--7031Chr06:4441735..4441759 (25 bp)
GTACACCATGTTTCTCGTTTTTGAG
LOC_Os06g08850
Target Sequence 
GTGAAATCACCGTTTGCGCTGCAAATCCTTCTGCTTGTTGTCGTTCCATGATCACGCTTCAGAGTTTGGGTTGACAGGTA
ACTGATTGTTGATAGGTGAAATGCTGAAGCTCAACTTAACACGGTGAAAGCATCATTGGTGGTATGGGAGTTAGGATCTT
GGAGACAGAATGATAGATAGTAACCACGTTAATTTTCTTTTCTTCTTGGTGATTGTGTTGCTGTAGGCTTAGCTTAGTGA
TTATTGTTTACCCTTTGGTCATGCTGTTAATCCAGTTGTAAACTTGTAATTGTGTTGGATATTGTTGGCAACAGCTTGGG
ACCTCGTAGTAGCATATTGTTGTATTTTGACTCGCCGAGCAAATTCTAGCGTCTCGGCGAGTACACCATGTTTCTCGTTT
TTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26452.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis