Browse Element(s) Details


Os.33759.1.S1_at

Description gb:AK069205.1
DB_XREF= gi:32979229
TID=Os.33759.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009C20, full insert sequence.
FL= gb:AK099118.1 gb:AK069205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0886011/11UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08850Os.26452.1.A1_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850OsAffx.15320.1.S1_x_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860Os.33759.1.S1_at11/116+4442022..4445511UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
LOC_Os06g08870OsAffx.27518.3.S1_x_at11/116+4448305..4448774hypothetical protein
LOC_Os06g08880Os.52182.1.S1_at10/116+4458008..4462883Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33759.1.S1_at--389--8431Chr06:4442667..4442691 (25 bp)
GGCCTCGCTAACATTCAGTGCTATT
LOC_Os06g08860
Os.33759.1.S1_at--610--4871Chr06:4442648..4442672 (25 bp)
GCTATTCTTCTTGTTTCGCTGGTGA
LOC_Os06g08860
Os.33759.1.S1_at--545--9031Chr06:4442591..4442615 (25 bp)
TGCACGATAGTGAACTCCGCTCTGA
LOC_Os06g08860
Os.33759.1.S1_at--591--8811Chr06:4442439..4442562 (25 bp)
TGTTGGATCTACTACCCTGGGTTTC
LOC_Os06g08860
Os.33759.1.S1_at--525--7331Chr06:4442393..4442417 (25 bp)
GTGCATACTCTCAACGTTACTGGAT
LOC_Os06g08860
Os.33759.1.S1_at--1153--8231Chr06:4442277..4442301 (25 bp)
GGCACATCCTCACAAGTAACATCAT
LOC_Os06g08860
Os.33759.1.S1_at--58--8971Chr06:4442184..4442208 (25 bp)
TGAAATGCCATACCAGTTCCAATCC
LOC_Os06g08860
Os.33759.1.S1_at--1008--571Chr06:4442163..4442187 (25 bp)
ATCCAATTTTTACCTGAACTCCCAT
LOC_Os06g08860
Os.33759.1.S1_at--688--5471Chr06:4442148..4442172 (25 bp)
GAACTCCCATTCTAACATCAGCAAA
LOC_Os06g08860
Os.33759.1.S1_at--655--391Chr06:4442067..4442091 (25 bp)
ATCACCTGGCTGTAGTGTACTCCAA
LOC_Os06g08860
Os.33759.1.S1_at--913--7431Chr06:4442053..4442077 (25 bp)
GTGTACTCCAATATCAGTCCCAGTA
LOC_Os06g08860
Target Sequence 
GGCCTCGCTAACATTCAGTGCTATTCTTCTTGTTTCGCTGGTGATGGGTATCGTCCTGAATTTCACCATGTTTTGGTGCA
CGATAGTGAACTCCGCTCTGACGACAACAATAGTAGGAGTTCTCAAGGGTGTTGGATCTACTACCCTGGGTTTCGTTCTG
CTGGGAGGTGTGGAAGTGCATACTCTCAACGTTACTGGATTGGTGATCAATACATTTGGAGGTGTCTGGTATTCATATGC
GAAGTATATGCAGAAGAGGAAGATGCCAAAGAGGATTGCACCTGATGTAGAGGCACATCCTCACAAGTAACATCATTCAG
TAGCTCTGAAGCATAGATATAGTAGCTATGTAGTTAAGCTTCATTCTTTAAGCAGATAAATTATTGAAATGCCATACCAG
TTCCAATCCAATTTTTACCTGAACTCCCATTCTAACATCAGCAAAATAGCTGGTGCAGTGAAGGAAGCTAATTAACTTTT
TTTTTTGTGAAAGACCAGTTGATCACCTGGCTGTAGTGTACTCCAATATCAGTCCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis