Browse Element(s) Details


Os.23699.1.A1_at

Description gb:CA760291
DB_XREF= gi:25804330
DB_XREF=BR060004A10C04.ab1
CLONE=BR060004A10C04.ab1
TID=Os.23699.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23699 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201101.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g396102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed
LOC_Os09g39580Os.52848.1.S1_at11/119+22716267..22719449expressed protein
LOC_Os09g39590Os.49318.1.S1_at11/119+22719823..22727019Cleavage and polyadenylation specificity factor, 100 kDa subunit, putative, expressed
LOC_Os09g39600OsAffx.18060.1.S1_at11/119+22729270..22730277hypothetical protein
LOC_Os09g39610Os.23699.1.A1_at2/119+22731580..22732191hypothetical protein
LOC_Os09g39620OsAffx.6534.1.S1_at11/119+22736078..22740681U-box domain containing protein, expressed
LOC_Os09g39630OsAffx.30212.1.S1_at11/119+22741663..22742696hypothetical protein
LOC_Os09g39640Os.37396.1.A1_at10/119+22746876..22751726U-box domain containing protein, expressed
LOC_Os09g39650Os.50881.1.S1_x_at11/119+22752886..22757022Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23699.1.A1_at--931--5171NONE
GCAATTTTCAAGGTACACGACCCCG
NONE
Os.23699.1.A1_at--178--9731Chr09:21262229..21262253 (25 bp)
TCAAGGTACACGACCCCGAATGCGG
NONE
Os.23699.1.A1_at--581--9332Chr09:21262292..21262316 (25 bp)
TCGCCATTGCCGTCCTGTGAGCTCG
NONE
Os.23699.1.A1_at--680--1274Chr09:22731924..22731948 (25 bp)
AGATCAAGAAGCATGCCAGGACCAT
LOC_Os09g39610
Os.23699.1.A1_at--211--974Chr09:21262349..21262373 (25 bp)
AGGACCATGCAGGAGTAGACCCAGA
NONE
Os.23699.1.A1_at--257--1191Chr09:21262362..21262386 (25 bp)
AGTAGACCCAGACCGCGCAGAGAAT
NONE
Os.23699.1.A1_at--1067--5811Chr09:21262372..21262396 (25 bp)
GACCGCGCAGAGAATGAACTTTCAG
NONE
Os.23699.1.A1_at--813--8971Chr09:21262386..21262410 (25 bp)
TGAACTTTCAGTTGAGCCAATACTC
NONE
Os.23699.1.A1_at--610--4391Chr09:21262401..21262425 (25 bp)
GCCAATACTCAGGAACAGTGGTGTC
NONE
Os.23699.1.A1_at--279--3492Chr09:21262410..21262434 (25 bp)
CAGGAACAGTGGTGTCGACGGCCAT
NONE
Os.23699.1.A1_at--25--3611Chr09:21262447..21262471 (25 bp)
CATTGCTGCAGAGATAAGGCGTTTG
NONE
Target Sequence 
GCAATTTTCAAGGTACACGACCCCGAATGCGGCCCGGGGCAGCCGCGCATCCTCACTGTTTCCGCCGCCATCGCCATTGC
CGTCCTGTGAGCTCGGCCCCTCGTACTTCCAGATCAAGAAGCATGCCAGGACCATGCAGGAGTAGACCCAGACCGCGCAG
AGAATGAACTTTCAGTTGAGCCAATACTCAGGAACAGTGGTGTCGACGGCCATGGCTGATGATGGCATTGCTGCAGAGAT
AAGGCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23699.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis