Browse Element(s) Details


Os.23805.2.A1_at

Description gb:AK110906.1
DB_XREF= gi:32996115
TID=Os.23805.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B08, full insert sequence.
FL= gb:AK110906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0129011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23805.2.A1_at--171--9031Chr02:164194..164218 (25 bp)
TGCACCGCCCTGAAACGAGGTGTCA
LOC_Os02g01290
Os.23805.2.A1_at--1090--2371Chr02:164182..164206 (25 bp)
AAACGAGGTGTCACCGCTGACGGAC
LOC_Os02g01290
Os.23805.2.A1_at--239--9151Chr02:163986..164010 (25 bp)
TGCGCAAGTGCAAATCGACGGTGGA
LOC_Os02g01290
Os.23805.2.A1_at--569--8351Chr02:163952..163976 (25 bp)
GGCGTCGCAGCTGATGGAATGTAAA
LOC_Os02g01290
Os.23805.2.A1_at--281--851Chr02:163939..163963 (25 bp)
ATGGAATGTAAAGGCGGCGGCCCTC
LOC_Os02g01290
Os.23805.2.A1_at--526--4491Chr02:163884..163908 (25 bp)
GCCGTGACTGGAGCTTCGAGGACCT
LOC_Os02g01290
Os.23805.2.A1_at--692--2471Chr02:163849..163873 (25 bp)
AACACCGCCGCCTAATAATAATAAT
LOC_Os02g01290
Os.23805.2.A1_at--301--10191Chr02:163757..163781 (25 bp)
TATATACTCCTCCTTAGGCCCTATA
LOC_Os02g01290
Os.23805.2.A1_at--752--871Chr02:163742..163766 (25 bp)
AGGCCCTATATAAACACGATCACTG
LOC_Os02g01290
Os.23805.2.A1_at--573--6451Chr02:163725..163749 (25 bp)
GATCACTGCTAACTCGATTATCATG
LOC_Os02g01290
Os.23805.2.A1_at--78--10212Chr02:163687..163711 (25 bp)
TATTATTGTAATCTGCCAATGCCCC
LOC_Os02g01290
Target Sequence 
TGCACCGCCCTGAAACGAGGTGTCACCGCTGACGGACTCCTCGCGCAGCCGCGCTACGCCCCGGTCAGGACGCCCCAATC
CGCATTGCTGCTGCTCGATCCACCACCACCGGCGCCCATGACGCCCACGTCGTCGTCCAGCAACAGCAACCACGACGACG
ACGACGAAAAGAAGAAGAAGCAGCCGATGCTGCAGCAGCAGAAGCAGGTGCGCAAGTGCAAATCGACGGTGGAGGAGGCG
TCGGCGTCGCAGCTGATGGAATGTAAAGGCGGCGGCCCTCCTCCTCGTCTCCGTCGCAGCGGCGGCGTCCGCCGTGACTG
GAGCTTCGAGGACCTCCGCGCCAACAACACCGCCGCCTAATAATAATAATAATTCAATCNCCCCCACCCTCCTGCTGNNN
NNNNNNNANNNNACNANNCANNNNNTGCTAAATACATATATATACTCCTCCTTAGGCCCTATATAAACACGATCACTGCT
AACTCGATTATCATGTAAATAATTTATTTATTATTGTAATCTGCCAATGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23805.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis