Browse Element(s) Details


OsAffx.11859.1.S1_at

Description tigr:9630.m00034
TID=OsAffx.11859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0132011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11859.1.S1_at--590--9971Chr02:171082..171106 (25 bp)
TACCAGACGGTCTCCAGTGCTCGGA
LOC_Os02g01320
OsAffx.11859.1.S1_at--938--6051Chr02:171109..171133 (25 bp)
GAGTTGGATAGGACACACTGCATTC
LOC_Os02g01320
OsAffx.11859.1.S1_at--798--2171Chr02:171123..171147 (25 bp)
ACACTGCATTCCAGACCATCAGGAA
LOC_Os02g01320
OsAffx.11859.1.S1_at--1116--3471Chr02:171142..171166 (25 bp)
CAGGAATTGGGATATGACCGGGACA
LOC_Os02g01320
OsAffx.11859.1.S1_at--679--7391Chr02:171167..171191 (25 bp)
GTGAGGACGCCACGGATATCCCTTA
LOC_Os02g01320
OsAffx.11859.1.S1_at--773--231Chr02:171182..171206 (25 bp)
ATATCCCTTACCCAGGAGTTGCCAG
LOC_Os02g01320
OsAffx.11859.1.S1_at--1150--8351Chr02:171211..171235 (25 bp)
GGCGAAGGCCACATTGCGCGATGCC
LOC_Os02g01320
OsAffx.11859.1.S1_at--1014--2071Chr02:171221..171245 (25 bp)
ACATTGCGCGATGCCCTGAGACGTG
LOC_Os02g01320
OsAffx.11859.1.S1_at--575--2891Chr02:171262..171286 (25 bp)
AAGGTCCGGCGCCATAAAGGCCATA
LOC_Os02g01320
OsAffx.11859.1.S1_at--553--291Chr02:171284..171308 (25 bp)
ATAGAGCGGCCATGTATCCACTGGT
LOC_Os02g01320
OsAffx.11859.1.S1_at--168--752Chr06:7776270..7776290 (21 bp)
ATGTATCCACTGGTCCGACCAGAAG
NONE
Target Sequence 
TACCAGACGGTCTCCAGTGCTCGGAGAGAGTTGGATAGGACACACTGCATTCCAGACCATCAGGAATTGGGATATGACCG
GGACAGTGAGGACGCCACGGATATCCCTTACCCAGGAGTTGCCAGCGAGGGCGAAGGCCACATTGCGCGATGCCCTGAGA
CGTGGGGGCACTACAAGGAGAAGGTCCGGCGCCATAAAGGCCATAGAGCGGCCATGTATCCACTGGTCCGACCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis