Browse Element(s) Details


Os.5658.1.S1_at

Description gb:AK069788.1
DB_XREF= gi:32979812
TID=Os.5658.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030J21, full insert sequence.
FL= gb:AK069788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0131011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01260OsAffx.19542.3.S1_x_at6/112+139660..143882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01270Os.53051.1.S1_at11/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01270Os.53051.2.S1_x_at10/112+146494..152568START domain-containing protein, putative, expressed
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5658.1.S1_at--580--5091Chr02:168976..169000 (25 bp)
GCACCGTCTGCAAGATGGACGACCT
LOC_Os02g01310
Os.5658.1.S1_at--155--1651Chr02:168940..168964 (25 bp)
AGCCCGAGGATTCTTCGTCGCCGTC
LOC_Os02g01310
Os.5658.1.S1_at--947--7891Chr02:168901..168925 (25 bp)
GGTTCGAGCACTGCCTTGAGCAGTA
LOC_Os02g01310
Os.5658.1.S1_at--1157--2891Chr02:168833..168857 (25 bp)
AAGGTCCGCATCTACGGGACGGCCA
LOC_Os02g01310
Os.5658.1.S1_at--952--8031Chr02:168714..168738 (25 bp)
GGAGTACGGCAGGATGGCCCACATC
LOC_Os02g01310
Os.5658.1.S1_at--589--191Chr02:168650..168674 (25 bp)
ATTTCTTCCTTACTTCCATCTATCG
LOC_Os02g01310
Os.5658.1.S1_at--36--3831Chr02:168620..168644 (25 bp)
CTGCCTCTGCCTAATTTTATTTCTA
LOC_Os02g01310
Os.5658.1.S1_at--568--10571Chr02:168600..168624 (25 bp)
TTCTACTACTCCTTATTAATTTGCA
LOC_Os02g01310
Os.5658.1.S1_at--803--131Chr02:168586..168610 (25 bp)
ATTAATTTGCATTCTCATCGATCGA
LOC_Os02g01310
Os.5658.1.S1_at--972--511Chr02:168570..168594 (25 bp)
ATCGATCGATCATCCGCTGGAATTT
LOC_Os02g01310
Os.5658.1.S1_at--420--4051Chr02:168564..168588 (25 bp)
CGATCATCCGCTGGAATTTCTTCTT
LOC_Os02g01310
Target Sequence 
GCACCGTCTGCAAGATGGACGACCTCGCGGAGCTGGAGCCCGAGGATTCTTCGTCGCCGTCGGACGCGCGCGCACGGTTC
GAGCACTGCCTTGAGCAGTACGGCGGCGCCGCCGACCTCCTCCGCGACGCCCTGGACAACCTCAAGGTCCGCATCTACGG
GACGGCCATGGAGCAGCTGTCCGCCGCGCTGGGCGCCGCCGAGAGCTGCGAGGACGCGTGGAAGGGCGACGAGGGCAACA
TCCCCATCGCCGCCCACGACAGGGAGTACGGCAGGATGGCCCACATCGCCATCGGCTTCACCCACGCCGCCGCCTAATCT
TCCTCNATTTCTTCCTTACTTCCATCTATCGCCTGCCTGCCTCTGCCTAATTTTATTTCTACTACTCCTTATTAATTTGC
ATTCTCATCGATCGATCATCCGCTGGAATTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis