Browse Element(s) Details


Os.2402.1.S1_at

Description gb:U31771.1
DB_XREF= gi:1173556
TID=Os.2402.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2402 (NCBI UniGene Cluster)
DEF=Oryza sativa Ory s 1 mRNA, complete cds.
PROD=Ory s 1
FL= gb:AK072792.1 gb:U31771.1 gb:AF261270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0165011/11Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g0161011/11Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g016303/11Major pollen allergen Ory s 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01600Os.30547.1.S1_at11/113+353623..358138Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g01610Os.2402.1.S1_at11/113+365220..366444Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01620NANA3+368102..368392hypothetical protein
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01650Os.2402.1.S1_at11/113+379438..380626Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2402.1.S1_at--274--3233Chr03:370476..370500 (25 bp)
CAAGTACGTCGCTGGTGATGGTGAC
LOC_Os03g01630
Os.2402.1.S1_at--372--553Chr03:370663..370687 (25 bp)
ATCCCTGATGGCTGGAAGGCCGACA
LOC_Os03g01630
Os.2402.1.S1_at--712--2953Chr03:370678..370702 (25 bp)
AAGGCCGACAGCGTGTACAAGTCCA
LOC_Os03g01630
Os.2402.1.S1_at--734--2852Chr03:366033..366057 (25 bp)
AAGTCCAACGTCCAGGCCAAGTGAG
LOC_Os03g01610
Os.2402.1.S1_at--693--5532Chr03:366074..366098 (25 bp)
GAAACCAGCGTACGTACGATCCGGC
LOC_Os03g01610
Os.2402.1.S1_at--879--10112Chr03:366156..366180 (25 bp)
TATGTGTTGCTGCATGCTTGCATGC
LOC_Os03g01610
Os.2402.1.S1_at--160--8552Chr03:366248..366272 (25 bp)
TGGAGCATATACACGCCAGCACTAT
LOC_Os03g01610
Os.2402.1.S1_at--438--3412Chr03:366264..366288 (25 bp)
CAGCACTATAATGGCGTCTGCTCTC
LOC_Os03g01610
Os.2402.1.S1_at--158--532Chr03:366291..366315 (25 bp)
ATCGAACTGGCCCTGTGACAATGGG
LOC_Os03g01610
Os.2402.1.S1_at--1021--7692Chr03:366314..366338 (25 bp)
GGGTCATTTGTTTTTGCCCACAATA
LOC_Os03g01610
Os.2402.1.S1_at--352--2252Chr03:366348..366372 (25 bp)
AAATTCATTCTCTGATTTTGCGTGA
LOC_Os03g01610
Target Sequence 
CAAGTACGTCGCTGGTGATGGTGACGTCGTGGAGGTGGAAATCAAGGAGAAGGGCTCCGAGGAGTGGAAGGCGCTCAAGG
AGTCATGGGGTGCCATTTGGAGGATAGACACCCCCAAGCCGCTCAAGGGCCCCTTCTCCGTCCGCGTCACCACCGAGGGT
GGCGAGAAGATCATCCGCCGAGGACGCCATCCCTGATGGCTGGAAGGCCGACAGCGTGTACAAGTCCAACGTCCAGGCCA
AGTGAGCATTTTAAGCAAGGAAGAAACCAGCGTACGTACGATCCGGCGCCGGCTGCCTATATATATATATATATATATAT
ATATATATATATATATTATATACTATATATGTGTTGCTGCATGCTTGCATGCATGCACATATATATCCAGAGAAATATTT
TTTAAACGAAATAATCTATAAATTTCTGAGCTAGGATTGTGGAGCATATACACGCCAGCACTATAATGGCGTCTGCTCTC
CCATCGAACTGGCCCTGTGACAATGGGGTCATTTGTTTTTGCCCACAATATTTTCTGCTAAATTCATTCTCTGATTTTGC
GTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis