Browse Element(s) Details


Os.43902.1.S1_at

Description gb:AU063714
DB_XREF= gi:4879415
DB_XREF=AU063714
CLONE=C63783_1A
TID=Os.43902.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative SKP1-like protein (OSJNBa0009C08.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0166011/11Skp1 family, dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01610Os.2402.1.S1_at11/113+365220..366444Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01620NANA3+368102..368392hypothetical protein
LOC_Os03g01630Os.2402.1.S1_at3/113+369916..370719Major pollen allergen Ory s 1 precursor, putative
LOC_Os03g01640Os.2405.1.S1_at11/113+375686..376785Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01650Os.2402.1.S1_at11/113+379438..380626Major pollen allergen Ory s 1 precursor, putative, expressed
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01700Os.18734.1.S1_at10/113+408839..411219transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43902.1.S1_at--86--2691Chr03:385380..385404 (25 bp)
AAGCTAATCCTGAACCTGTAAACAA
LOC_Os03g01660
Os.43902.1.S1_at--1052--5391Chr03:385274..385298 (25 bp)
GAAGCTACTCGTGGAGTTCCATTCA
LOC_Os03g01660
Os.43902.1.S1_at--906--6691Chr03:385259..385283 (25 bp)
GTTCCATTCAATGCGGGTACTGGTA
LOC_Os03g01660
Os.43902.1.S1_at--59--231Chr03:385234..385258 (25 bp)
ATATTTCTAGAACACCTTGCCAAAG
LOC_Os03g01660
Os.43902.1.S1_at--11--5511Chr03:385225..385249 (25 bp)
GAACACCTTGCCAAAGCTCAGATGT
LOC_Os03g01660
Os.43902.1.S1_at--500--6291Chr03:385196..385220 (25 bp)
GATGATGTTGAGTACCCCTTTGAAG
LOC_Os03g01660
Os.43902.1.S1_at--309--6091Chr03:385187..385211 (25 bp)
GAGTACCCCTTTGAAGATGCTGACC
LOC_Os03g01660
Os.43902.1.S1_at--196--5851Chr03:385166..385190 (25 bp)
GACCTTGATGATGGACTTGATCCTG
LOC_Os03g01660
Os.43902.1.S1_at--519--6151Chr03:384725..384749 (25 bp)
GAGGTTGAATTCTGTTTGGCCTGAA
LOC_Os03g01660
Os.43902.1.S1_at--205--7531Chr03:384654..384678 (25 bp)
GTGGCAATGGTTCTCTGCAAAGATT
LOC_Os03g01660
Os.43902.1.S1_at--115--2071Chr03:384321..384345 (25 bp)
ACTTGAGTAAGTGCTCGCCGAAAAA
LOC_Os03g01660
Target Sequence 
AAGCTAATCCTGAACCTGTAAACAAGGAGGAAGCTACTCGTGGAGTTCCATTCAATGCGGGTACTGGTAATATTTCTAGA
ACACCTTGCCAAAGCTCAGATGTGCAAGATGATGTTGAGTACCCCTTTGAAGATGCTGACCTTGATGATGGACTTGATCC
TGCAATGCAGNAAGAGCTTGACAGAGAAGTGGAGGACTTCGCAAGGAGGTTGAATTCTGTTTGGCCTGAAAGAATGCATT
TAGGCCAAGAAAGAAGGATTGAGTCACATATGATTGGTGGCAATGGTTCTCTGCAAAGATTTTCTGGNNNNNNNNGTTCA
ATCACAGGTGAGNAGGTTANGCGCCAGGATCAACAAGCAGAAGCACAGGAAATTTGTGCNCATGCAGCTTGGAANAGAGC
TAGAGACNACCGANCAGGGNCACCTGTTTNACTTGAGTAAGTGCTCGCCGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis