Browse Element(s) Details


Os.18734.1.S1_at

Description gb:AK101092.1
DB_XREF= gi:32986301
TID=Os.18734.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative anion transporter (OJ1384D03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024M24, full insert sequence.
FL= gb:AK101092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0170010/11transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01660Os.43902.1.S1_at11/113+384055..388497Skp1 family, dimerisation domain containing protein, expressed
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01700Os.18734.1.S1_at10/113+408839..411219transmembrane protein, putative, expressed
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18734.1.S1_at--791--1891Chr03:409414..409438 (25 bp)
ACGTATATATATGCTCCTCAACCTC
LOC_Os03g01700
Os.18734.1.S1_at--597--6811Chr03:409325..409349 (25 bp)
GTTTTACCCACCGTATATGTGCTGT
LOC_Os03g01700
Os.18734.1.S1_at--1053--6891Chr03:409295..409319 (25 bp)
GTATGGCCGGCGAGCTTGAAATTGA
LOC_Os03g01700
Os.18734.1.S1_at--183--71Chr03:409275..409299 (25 bp)
ATTGAATTGGCCTTGCTTGCATGCA
LOC_Os03g01700
Os.18734.1.S1_at--833--7751Chr03:409245..409269 (25 bp)
GGTGATCAGATCAGCTCAGCTAGCT
LOC_Os03g01700
Os.18734.1.S1_at--358--1531Chr03:409123..409147 (25 bp)
AGCAGTGCACTCTGCATGCTTAAAT
LOC_Os03g01700
Os.18734.1.S1_at--809--6491Chr03:409061..409085 (25 bp)
GATATGTGCATGTTCCTCAAAATAC
LOC_Os03g01700
Os.18734.1.S1_at--699--1191Chr03:408998..409022 (25 bp)
AGTATGTAGCATGTCTTGTTCAAAC
LOC_Os03g01700
Os.18734.1.S1_at--856--2191Chr03:408975..408999 (25 bp)
ACAAATATTTGTAGCCCTCTCTCTC
LOC_Os03g01700
Os.18734.1.S1_at--656--1151Chr03:408922..408946 (25 bp)
AGTCTGTTCAATGTCACCTCAGTTC
LOC_Os03g01700
Os.18734.1.S1_at--316--411Chr03:408838..408862 (25 bp)
ATCAGTATGCATGCTCTTGTTGCCA
NONE
Target Sequence 
ACGTATATATATGCTCCTCAACCTCAAGTCAATTAATTAAGAGAATGGATGAATGAATCAATGTTGTGTATGATTTCCTT
TTTGTTTTTGTTTTACCCACCGTATATGTGCTGTGTGGTGTATGGCCGGCGAGCTTGAAATTGAATTGGCCTTGCTTGCA
TGCATGCATGGTGATCAGATCAGCTCAGCTAGCTAGCTAAATCTTGCTTAATTTTATCAAGTGTCAATCATGATGAGAAG
AGAGGGAACTAGATGGAGCTAGCTAGCTAGCAACACATGCAGTGTGTGCTAAGCAGTGCACTCTGCATGCTTAAATTTGC
TTGCTTAATTCAACATCGTATTACATGTATGTTGATATGTGCATGTTCCTCAAAATACATGGAAAAAAAATGTTTCTACA
CATCTCAATCGTATAGAGTATGTAGCATGTCTTGTTCAAACAAATATTTGTAGCCCTCTCTCTCTCTCTCTCTTTAGGTT
TATTAATTAATTAGTCTGTTCAATGTCACCTCAGTTCATAGAGATGCTATACTTAATTAATTGCTCCATGTATGCAGAGT
TGTACTACCTTAAAATATCAGTATGCATGCTCTTGTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis