Browse Element(s) Details

Os.17650.1.S2_at

Description

gb:CB651657
DB_XREF= gi:29646650
DB_XREF=OSJNEb16L07.r
CLONE=OSJNEb16L07
TID=Os.17650.1
CNT=10
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.17650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative kinesin-related protein (OJ1384D03.2), mRNA
FL= gb:AK063431.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g01710	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g01670	Os.28346.5.S1_at	11/11	3	+	391689..394364	E1-E2 ATPase family protein
LOC_Os03g01670	Os.28346.4.S1_x_at	11/11	3	+	391689..394364	E1-E2 ATPase family protein
LOC_Os03g01670	Os.28346.5.S1_x_at	10/11	3	+	391689..394364	E1-E2 ATPase family protein
LOC_Os03g01670	Os.28346.4.S1_at	10/11	3	+	391689..394364	E1-E2 ATPase family protein
LOC_Os03g01684	Os.28346.5.S1_at	11/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.28346.5.S1_x_at	10/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.28346.2.S1_at	10/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.28346.3.S1_x_at	10/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.28346.4.S1_x_at	9/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.28346.1.S1_x_at	6/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.28346.1.S1_at	2/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01684	Os.49292.2.S1_x_at	1/11	3	+	395061..406955	retrotransposon protein, putative, unclassified
LOC_Os03g01700	Os.18734.1.S1_at	10/11	3	+	408839..411219	transmembrane protein, putative, expressed
LOC_Os03g01710	Os.17650.1.S1_at	11/11	3	+	418686..425932	expressed protein
LOC_Os03g01710	Os.17650.1.S2_at	11/11	3	+	418686..425932	expressed protein
LOC_Os03g01720	OsAffx.12703.1.S1_at	11/11	3	+	430744..437650	hypothetical protein
LOC_Os03g01730	Os.27807.2.S1_a_at	11/11	3	+	443523..446205	expressed protein
LOC_Os03g01740	Os.27807.1.S1_a_at	11/11	3	+	448680..449420	expressed protein
LOC_Os03g01740	Os.27807.1.S1_at	11/11	3	+	448680..449420	expressed protein
LOC_Os03g01750	Os.8372.1.S1_at	11/11	3	+	449799..455084	protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0042306	biological_process	regulation of protein import into nucleus
GO:0005856	cellular_component	cytoskeleton
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17650.1.S2_at--588--721	1	Chr03:425120..425144 (25 bp)	GTCGTAGAACTATTGCCTGCCATAA	LOC_Os03g01710
Os.17650.1.S2_at--495--813	1	Chr03:425381..425405 (25 bp)	GGACATCATATGAACCAGAGCCATG	LOC_Os03g01710
Os.17650.1.S2_at--1104--341	1	Chr03:425396..425420 (25 bp)	CAGAGCCATGTCTGCACCATGACAG	LOC_Os03g01710
Os.17650.1.S2_at--125--627	1	Chr03:425465..425489 (25 bp)	GATGTGCACCAGACTATGCTAGTTG	LOC_Os03g01710
Os.17650.1.S2_at--436--1005	1	Chr03:425484..425508 (25 bp)	TAGTTGGTACTGGAGCATGAGCTGC	LOC_Os03g01710
Os.17650.1.S2_at--945--889	1	Chr03:425543..425567 (25 bp)	TGAGTCTGTGACTTCTCCCTGGAGA	LOC_Os03g01710
Os.17650.1.S2_at--776--785	1	Chr03:425654..425678 (25 bp)	GGTATACCGGTTTCTTGATTGACTC	LOC_Os03g01710
Os.17650.1.S2_at--781--973	1	Chr03:425699..425723 (25 bp)	TAATATGGTTACTCGGATCACCCGA	LOC_Os03g01710
Os.17650.1.S2_at--973--655	1	Chr03:425725..425749 (25 bp)	GATTACATCCATTCCAGCAAGAGTG	LOC_Os03g01710
Os.17650.1.S2_at--544--419	1	Chr03:425788..425812 (25 bp)	CCCTCTCCCTGAGAACAGTGTGATT	LOC_Os03g01710
Os.17650.1.S2_at--1033--343	1	Chr03:425838..425862 (25 bp)	CAGTCACCATACTCTCCTAAATTAT	LOC_Os03g01710

Target Sequence

GTCGTAGAACTATTGCCTGCCATAACAGAGACTGACATCACAGATGGACATCATATGAACCAGAGCCATGTCTGCACCAT
GACAGTATGTTATCATGTGAGAGCAAAANCCAAGTGCTGAAGCAGATGTGATGTGCACCAGACTATGCTAGTTGGTACTG
GAGCATGAGCTGCAAAANACTGAAGGTCTTGGTGATAGGGTGAACTGTGAGTCTGTGACTTCTCCCTGGAGAAAAAGGCT
ACCNCTAAACCTTATCAAGATAACGNCCTTTTAACTGATTGATTATTATTTGTGTAATATCTTGTCTATTTTTTGTCCGG
TATACCGGTTTCTTGATTGACTCGGAGGGTGAACGTTATTTGTTAATATGGTTACTCGGATCACCCGAAGATTACATCCA
TTCCAGCAAGAGTGAGCTTAACTGTTGATAAAAAATGTATTAGCTCTTTTTTCCCTCTCCCTGAGAACAGTGTGATTGTG
TCAAGAGATTTAGTTAGTAGTACAGTCACCATACTCTCCTAAATTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis