Browse Element(s) Details


Os.8372.1.S1_at

Description gb:AK062666.1
DB_XREF= gi:32972684
TID=Os.8372.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1384D03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F11, full insert sequence.
FL= gb:AK062666.1 gb:AK063074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0175011/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8372.1.S1_at--866--7331Chr03:450451..450557 (25 bp)
GTGAATAACTACGTCCAGGTCTCCA
LOC_Os03g01750
Os.8372.1.S1_at--863--7771Chr03:450434..450458 (25 bp)
GGTCTCCAGGGATGGTACCAGCGAT
LOC_Os03g01750
Os.8372.1.S1_at--1010--131Chr03:450398..450422 (25 bp)
ATTAAGGGAGCGTTTGACTGGTCAA
LOC_Os03g01750
Os.8372.1.S1_at--1123--5711Chr03:450383..450407 (25 bp)
GACTGGTCAAAATCCCGATCTTACG
LOC_Os03g01750
Os.8372.1.S1_at--543--6551Chr03:450187..450211 (25 bp)
GATTATCGACTCGTTTTGGGCTCGC
LOC_Os03g01750
Os.8372.1.S1_at--951--831Chr03:450122..450146 (25 bp)
ATGGAGCTTCCCGATGAACAGAGTA
LOC_Os03g01750
Os.8372.1.S1_at--335--5751Chr03:450097..450121 (25 bp)
GACGGAGCTTCCAAATGTTATCATC
LOC_Os03g01750
Os.8372.1.S1_at--774--2991Chr03:450084..450108 (25 bp)
AATGTTATCATCTTGGGTCGCCATG
LOC_Os03g01750
Os.8372.1.S1_at--14--7711Chr03:450070..450094 (25 bp)
GGGTCGCCATGTCAATACTATTAAT
LOC_Os03g01750
Os.8372.1.S1_at--753--6091Chr03:450007..450031 (25 bp)
GAGTAATCACGAGTCGTCGCTGTAA
LOC_Os03g01750
Os.8372.1.S1_at--723--611Chr03:449957..449981 (25 bp)
ATGCGTTTGCTCATAGTAACACTGT
LOC_Os03g01750
Target Sequence 
GTGAATAACTACGTCCAGGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAA
TCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGAATTGANATTG
GATTATCGACTCGTTTTGGGCTCGCTGTGCANCAGGGAAGACCTGCTGATGANCAACAACAGATCATGGAGCTTCCCGAT
GAACAGAGTAGACGGAGCTTCCAAATGTTATCATCTTGGGTCGCCATGTCAATACTATTAATTAATTAGTTCAAATCAAC
CCTGTAAATGGTTTACTCATGAGTAATCACGAGTCGTCGCTGTAAACAAACGATGCATAAGACGAGCAATATGCGTTTGC
TCATAGTAACACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis